RNA–Protein interactions for RNA: ENST00000505331.1

CPNE4-204, Transcript of copine 4, human

TSL 5

Gene CPNE4, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE4-204	ENST00000505331	TMCO5B	A8MYB1	307 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IDS	B3KWA1	339 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	RNF103	O00237	685 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	TNFRSF10C	O14798	259 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SMAD7	O15105	426 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SLC26A4	O43511	780 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	KIF1C	O43896	1103 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SLC19A2	O60779	497 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SHOX2	O60902	331 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	TM7SF2	O76062	418 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SLCO2B1	O94956	709 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FAM13A	O94988	1023 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	CST3	P01034	146 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IGLV3-27	P01718	113 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	HOXD4	P09016	255 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	RAB40AL	P0C0E4	278 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	CCNB1	P14635	433 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SNRPB	P14678	240 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	PDGFRA	P16234	1089 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IDS	P22304	550 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	KEL	P23276	732 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	MSX1	P28360	303 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ATIC	P31939	592 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	PPP1R2	P41236	205 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ZNF131	P52739	623 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SOX8	P57073	446 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ORC2	Q13416	577 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	KEAP1	Q14145	624 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NR1I3	Q14994	352 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	LRRC14	Q15048	493 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IRF4	Q15306	451 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	INA	Q16352	499 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	C3AR1	Q16581	482 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	HIF1A	Q16665	826 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ANKRD40	Q6AI12	368 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NADSYN1	Q6IA69	706 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FAM199X	Q6PEV8	388 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FOXR2	Q6PJQ5	311 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	BRICD5	Q6PL45	260 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	MICALCL	Q6ZW33	695 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	B4GALNT4	Q76KP1	1039 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	TRAPPC11	Q7Z392	1133 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	KCNK18	Q7Z418	384 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	YTHDF3	Q7Z739	585 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	PPP1R3B	Q86XI6	285 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	CFAP52	Q8N1V2	620 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ZBTB2	Q8N680	514 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	C12orf29	Q8N999	325 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	TC2N	Q8N9U0	490 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	CHST14	Q8NCH0	376 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	C1orf131	Q8NDD1	294 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NEK11	Q8NG66	645 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	OR56A4	Q8NGH8	313 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	CCL4L1	Q8NHW4	92 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	GRIN3A	Q8TCU5	1115 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	OR1E3	Q8WZA6	343 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NCSTN	Q92542	709 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NACC2	Q96BF6	587 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SAAL1	Q96ER3	474 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	MYEOV	Q96EZ4	313 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ELMO2	Q96JJ3	720 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IP6K3	Q96PC2	410 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FCRL4	Q96PJ5	515 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	GSDMA	Q96QA5	445 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SLC38A3	Q99624	504 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	NAPG	Q99747	312 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	TRIM56	Q9BRZ2	755 aa	Known RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FEM1A	Q9BSK4	669 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	APOO	Q9BUR5	198 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	GSDMC	Q9BYG8	508 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	AMBRA1	Q9C0C7	1298 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	HSD3B7	Q9H2F3	369 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ST6GALNAC4	Q9H4F1	302 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SMYD3	Q9H7B4	428 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	PARVG	Q9HBI0	331 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ZBTB20	Q9HC78	741 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	ANLN	Q9NQW6	1124 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	FAM49B	Q9NUQ9	324 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	COQ3	Q9NZJ6	369 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	IL17C	Q9P0M4	197 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SEC14L3	Q9UDX4	400 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	HS3ST2	Q9Y278	367 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	MEMO1	Q9Y316	297 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	RP1	P56715	2156 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	MAP1A	P78559	2803 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	SCN1A	P35498	2009 aa		4.21	□□□□□ -1.74
CPNE4-204	ENST00000505331	PKDREJ	Q9NTG1	2253 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	FAM237B	A0A1B0GVD1	139 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	TTC24	A2A3L6	582 aa	Predicted RBP	4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	EIF3CL	B5ME19	914 aa	Known RBP	4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	EBAG9	O00559	213 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	TOX3	O15405	576 aa	Predicted RBP	4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	THAP12	O43422	761 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	MFAP3L	O75121	409 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	PMPCB	O75439	489 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	MYL1	P05976	194 aa		4.2	□□□□□ -1.74
CPNE4-204	ENST00000505331	EPB41	P11171	864 aa	Known RBP	4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms