RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, human

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-222	ENST00000498810	CKMT1A	P12532	417 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	PPM1F	P49593	454 aa	Predicted RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	HADHB	P55084	474 aa	Known RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	CLDN6	P56747	220 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	IFI35	P80217	286 aa	Predicted RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	ZBTB17	Q13105	803 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	SMAD1	Q15797	465 aa	Known RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	ALG11	Q2TAA5	492 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	TFDP3	Q5H9I0	405 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	PNCK	Q6P2M8	343 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	SPOCD1	Q6ZMY3	1216 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	EFL1	Q7Z2Z2	1120 aa	Known RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	TAF8	Q7Z7C8	310 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	TSPAN33	Q86UF1	283 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	HEATR4	Q86WZ0	1026 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	PLA2G15	Q8NCC3	412 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	CCHCR1	Q8TD31	782 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	TFB1M	Q8WVM0	346 aa	Known RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	EDARADD	Q8WWZ3	215 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	NAT6	Q93015	286 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	FATE1	Q969F0	183 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	AP2M1	Q96CW1	435 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	DTD2	Q96FN9	168 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	SCRN2	Q96FV2	425 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	CALR3	Q96L12	384 aa	Known RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	TBATA	Q96M53	351 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	DEPDC7	Q96QD5	511 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	BRD8	Q9H0E9	1235 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	CYP4F12	Q9HCS2	524 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	PKD2L2	Q9NZM6	624 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	CD84	Q9UIB8	345 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	KLF15	Q9UIH9	416 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	GPR34	Q9UPC5	381 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810	ALG6	Q9Y672	507 aa		10.65	□□□□□ -0.7
CDK11A-222	ENST00000498810		A0A0J9YYE9	177 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	PRSS38	A1L453	326 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810		B4DGG1	531 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	LMO7DN	F2Z398	122 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	TPP1	O14773	563 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	MTSS1	O43312	755 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	LCA5L	O95447	670 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	TRBC1	P01850	177 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	PYGL	P06737	847 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	PDHA1	P08559	390 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	FAM157B	P0CG42	384 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	MYF5	P13349	255 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	LHCGR	P22888	699 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	NR2C2	P49116	596 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	VAV2	P52735	878 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	RPL26	P61254	145 aa	Known RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	SLC10A2	Q12908	348 aa	Predicted RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	GALNT3	Q14435	633 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	TCEAL1	Q15170	157 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	SAMD5	Q5TGI4	173 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	CRTC1	Q6UUV9	634 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	SLCO4C1	Q6ZQN7	724 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810		Q6ZVL8	140 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	KDELC2	Q7Z4H8	507 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	HSD11B1L	Q7Z5J1	315 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	NT5DC3	Q86UY8	548 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	ZC3H18	Q86VM9	953 aa	Known RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	MARCH9	Q86YJ5	346 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	KATNAL2	Q8IYT4	538 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	RCOR2	Q8IZ40	523 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	ARL10	Q8N8L6	244 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	FAM181A	Q8N9Y4	354 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	ACRBP	Q8NEB7	543 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	MDM1	Q8TC05	714 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	FUBP1	Q96AE4	644 aa	Known RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	COQ10A	Q96MF6	247 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	RBM15	Q96T37	977 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	CAAP1	Q9H8G2	361 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	CARS2	Q9HA77	564 aa	Known RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	IMPACT	Q9P2X3	320 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	SALL4	Q9UJQ4	1053 aa		10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	RPL26L1	Q9UNX3	145 aa	Known RBP	10.64	□□□□□ -0.71
CDK11A-222	ENST00000498810	CACNA1B	Q00975	2339 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	SCN8A	Q9UQD0	1980 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	C3orf70	A6NLC5	250 aa	Predicted RBP	10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810		H7C0C1	242 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	NRDC	O43847	1150 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	GCAT	O75600	419 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	STK10	O94804	968 aa	Known RBP	10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	DKK1	O94907	266 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	ASMTL	O95671	621 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	GP1BA	P07359	652 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	ARAF	P10398	606 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	CDKN2B	P42772	138 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	GNPDA1	P46926	289 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	ATP5O	P48047	213 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	SNRPN	P63162	240 aa	Known RBP	10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	CDK3	Q00526	305 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	KIF5A	Q12840	1032 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	ILF3	Q12906	894 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	ALG1L	Q6GMV1	187 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	GUSBP11	Q6P575	273 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	B4GALNT4	Q76KP1	1039 aa		10.63	□□□□□ -0.71
CDK11A-222	ENST00000498810	GAS2L3	Q86XJ1	694 aa		10.63	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms