RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LRRC14Q15048 493 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 IRF4Q15306 451 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 CCDC6Q16204 474 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 WSCD2Q2TBF2 565 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 FAM153CQ494X1 144 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 ANKRD20A4Q4UJ75 823 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 CCNI2Q6ZMN8 369 aaPredicted RBP17.12■□□□□ 0.33
LIME1-208ENST00000493265 NRSN1Q8IZ57 195 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 PLA2G15Q8NCC3 412 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 OR6P1Q8NGX9 317 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 PYROXD1Q8WU10 500 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 PTCD2Q8WV60 388 aaKnown RBP17.12■□□□□ 0.33
LIME1-208ENST00000493265 FOXJ1Q92949 421 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 HDAC10Q969S8 669 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 SERAC1Q96JX3 654 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 TBATAQ96M53 351 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 AGAP2Q99490 1192 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 DUSP15Q9H1R2 295 aaPredicted RBP17.12■□□□□ 0.33
LIME1-208ENST00000493265 FAM96AQ9H5X1 160 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 MBNL1Q9NR56 388 aaKnown RBP17.12■□□□□ 0.33
LIME1-208ENST00000493265 RAD18Q9NS91 495 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 TEX264Q9Y6I9 313 aa17.12■□□□□ 0.33
LIME1-208ENST00000493265 GLYATL1P3A0A0U1RQE8 302 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 FAM237BA0A1B0GVD1 139 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 K7ESM1 405 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 EIF3HO15372 352 aaKnown RBP eCLIP17.11■□□□□ 0.33
LIME1-208ENST00000493265 LATO43561 262 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 POLBP06746 335 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 HNRNPA2B1P22626 353 aaKnown RBP17.11■□□□□ 0.33
LIME1-208ENST00000493265 AKT2P31751 481 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 HADHAP40939 763 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 PRAMEP78395 509 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 CHRNA6Q15825 494 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 ST3GAL2Q16842 350 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 PLK5Q496M5 336 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 ZRANB3Q5FWF4 1079 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 RAET1GQ6H3X3 334 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 CYP2U1Q7Z449 544 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 C11orf74Q86VG3 221 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 PALM2Q8IXS6 379 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 PELI3Q8N2H9 469 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 OTUD6BQ8N6M0 293 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 OR13J1Q8NGT2 312 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 LRRC39Q96DD0 335 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 CDKN2AIPNLQ96HQ2 116 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 FCRL3Q96P31 734 aaPredicted RBP17.11■□□□□ 0.33
LIME1-208ENST00000493265 PCED1AQ9H1Q7 454 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 MRM3Q9HC36 420 aaKnown RBP17.11■□□□□ 0.33
LIME1-208ENST00000493265 IL26Q9NPH9 171 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 AASDHPPTQ9NRN7 309 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 IL1RAPL1Q9NZN1 696 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 ATXN2Q99700 1313 aaKnown RBP17.11■□□□□ 0.33
LIME1-208ENST00000493265 TRPM6Q9BX84 2022 aa17.11■□□□□ 0.33
LIME1-208ENST00000493265 SCN8AQ9UQD0 1980 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 CCDC162PA2VCL2 907 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 RGSL1A5PLK6 1076 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 GOLGA8KD6RF30 607 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 GOLGA8TH3BQL2 631 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 GPR39O43194 453 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A9O60656 530 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 RHOBTB1O94844 696 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 VAPBO95292 243 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A6P19224 532 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A1P22309 533 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A4P22310 534 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 CD27P26842 260 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 TNFRSF8P28908 595 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 MC4RP32245 332 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A3P35503 534 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A5P35504 534 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 GPR1P46091 355 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 CRYMQ14894 314 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 SF3A2Q15428 464 aaKnown RBP17.1■□□□□ 0.33
LIME1-208ENST00000493265 AASDHQ4L235 1098 aaPredicted RBP17.1■□□□□ 0.33
LIME1-208ENST00000493265 LYSMD4Q5XG99 296 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 PMS2CLQ68D20 193 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UNC5AQ6ZN44 842 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UNC5BQ8IZJ1 945 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 TP53I13Q8NBR0 393 aaPredicted RBP17.1■□□□□ 0.33
LIME1-208ENST00000493265 SLC6A18Q96N87 628 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 NAT9Q9BTE0 207 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A7Q9HAW7 530 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A10Q9HAW8 530 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 UGT1A8Q9HAW9 530 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 TREX1Q9NSU2 369 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 SLCO1B1Q9Y6L6 691 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 SLC30A1Q9Y6M5 507 aa17.1■□□□□ 0.33
LIME1-208ENST00000493265 DOCK9Q9BZ29 2069 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 A0A1W2PPC4 97 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 H0Y8X5 98 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 FPGTO14772 594 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 INPP4BO15327 924 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 USP1O94782 785 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 PRAMEF1O95521 474 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 GOT2P00505 430 aaKnown RBP17.09■□□□□ 0.33
LIME1-208ENST00000493265 PRSS56P0CW18 603 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 PAMP19021 973 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 ITPKAP23677 461 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 MCM3P25205 808 aa17.09■□□□□ 0.33
LIME1-208ENST00000493265 IGFALSP35858 605 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms