RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-216	ENST00000492977	TMEM237	Q96Q45	408 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	EBF4	Q9BQW3	602 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	UNK	Q9C0B0	810 aa	Known RBP	13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	LMAN2L	Q9H0V9	348 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	SUV39H2	Q9H5I1	410 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	POMK	Q9H5K3	350 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	VTI1B	Q9UEU0	232 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	FBXO10	Q9UK96	956 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	WNT6	Q9Y6F9	365 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	GBF1	Q92538	1859 aa		13.99	□□□□□ -0.17
PTPN7-216	ENST00000492977	C1orf232	A0A0U1RR37	186 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	MAP3K7	O43318	606 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	PKM	P14618	531 aa	Known RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	POLR2E	P19388	210 aa	Known RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	CALB2	P22676	271 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	TUBB3	Q13509	450 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	EPGN	Q6UW88	154 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	TRIM67	Q6ZTA4	783 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	TAS2R42	Q7RTR8	314 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	MAVS	Q7Z434	540 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	VOPP1	Q96AW1	172 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	SGF29	Q96ES7	293 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	PTCD3	Q96EY7	689 aa	Known RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	SCRN2	Q96FV2	425 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	TTC1	Q99614	292 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	TFB2M	Q9H5Q4	396 aa	Known RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	ALG9	Q9H6U8	611 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	COG4	Q9H9E3	785 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	ARL8B	Q9NVJ2	186 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	SLCO3A1	Q9UIG8	710 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	APPL1	Q9UKG1	709 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	MED16	Q9Y2X0	877 aa		13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	OAS3	Q9Y6K5	1087 aa	Known RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPN7-216	ENST00000492977	CCDC189	A1A4V9	331 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977		A8MT66	165 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	CAPN14	A8MX76	684 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	WASH3P	C4AMC7	463 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	MATN2	O00339	956 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	ZBTB14	O43829	449 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	VPS26A	O75436	327 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	SLC34A2	O95436	690 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	ESR1	P03372	595 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	CHRNG	P07510	517 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	PTPN4	P29074	926 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	CCNH	P51946	323 aa	Predicted RBP	13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	ATP6V0D1	P61421	351 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	KCNJ2	P63252	427 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	NFKB2	Q00653	900 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	DHCR24	Q15392	516 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	LYPLAL1	Q5VWZ2	237 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	GRAMD4	Q6IC98	578 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	DPY19L3	Q6ZPD9	716 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	TPRG1	Q6ZUI0	275 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	USP45	Q70EL2	814 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	TTC7B	Q86TV6	843 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	LSMEM2	Q8N112	164 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	NKAP	Q8N5F7	415 aa	Known RBP	13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	CCNYL1	Q8N7R7	359 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	GRIN3A	Q8TCU5	1115 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	OSCP1	Q8WVF1	389 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	REPIN1	Q9BWE0	567 aa	Known RBP	13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	DERL2	Q9GZP9	239 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	SFXN1	Q9H9B4	322 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	DUS2	Q9NX74	493 aa	Known RBP	13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	TRIM33	Q9UPN9	1127 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	ERVW-1	Q9UQF0	538 aa		13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977	YBX2	Q9Y2T7	364 aa	Known RBP	13.97	□□□□□ -0.17
PTPN7-216	ENST00000492977		A0A0U1RQS6	177 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	GOLGA8CP	A6NN73	597 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	HDAC3	O15379	428 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	SMIM24	O75264	130 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	CLDN7	O95471	211 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	TPBGL	P0DKB5	382 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	IMPDH1	P20839	514 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	MPST	P25325	297 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	NNMT	P40261	264 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	RECQL	P46063	649 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	NRIP1	P48552	1158 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	ELF3	P78545	371 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	GALNT1	Q10472	559 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	SETMAR	Q53H47	684 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	METTL21C	Q5VZV1	264 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	FBXW10	Q5XX13	1052 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	SEL1L3	Q68CR1	1132 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	UGT3A1	Q6NUS8	523 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	PAQR3	Q6TCH7	311 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	SNX20	Q7Z614	316 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	ZSWIM9	Q86XI8	627 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	KIRREL3	Q8IZU9	778 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	KIF2B	Q8N4N8	673 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	C12orf76	Q8N812	135 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	KCNJ9	Q92806	393 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	KIAA1191	Q96A73	305 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	PRR11	Q96HE9	360 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	MCCC1	Q96RQ3	725 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	TRMO	Q9BU70	441 aa		13.96	□□□□□ -0.17
PTPN7-216	ENST00000492977	CCDC106	Q9BWC9	280 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms