RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 MAGEA13PA6NCF6 341 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 HNRNPCL2B2RXH8 293 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 SCAMP1O15126 338 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 GPC4O75487 556 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 AFPP02771 609 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 IL15P40933 162 aaPredicted RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 CLNS1AP54105 237 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 RRP1P56182 461 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 PDE1BQ01064 536 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 ACSM2AQ08AH3 577 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 LMOD3Q0VAK6 560 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 ZNF155Q12901 538 aaPredicted RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 MAPRE1Q15691 268 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 PNLIPRP3Q17RR3 467 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 GPATCH4Q5T3I0 446 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 IRAK1BP1Q5VVH5 260 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 C9orf57Q5W0N0 161 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 FRG2Q64ET8 278 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 ACSM2BQ68CK6 577 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 SPSB3Q6PJ21 355 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 GLDNQ6ZMI3 551 aaPredicted RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 SEPT14Q6ZU15 432 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 GPR180Q86V85 440 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 TICAM1Q8IUC6 712 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 FOXRED2Q8IWF2 684 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 TMTC2Q8N394 836 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 NME8Q8N427 588 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 DNAAF4Q8WXU2 420 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 APBB2Q92870 758 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 MTERF1Q99551 399 aaKnown RBP4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 CHCHD6Q9BRQ6 235 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 C1QTNF4Q9BXJ3 329 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 SIL1Q9H173 461 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 KCNN2Q9H2S1 579 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 SMARCAD1Q9H4L7 1026 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 RETREG1Q9H6L5 497 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 PLEKHA5Q9HAU0 1116 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 PCDH9Q9HC56 1237 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 ZNF580Q9UK33 172 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 KCNS2Q9ULS6 477 aa4.85□□□□□ -1.63
HMGB1P38-201ENST00000490557 A0A0G2JPF8 293 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 FSD2A1L4K1 749 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 HNRNPCL3B7ZW38 293 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 M0QZ24 198 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 CLTBP09497 229 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 LINC00271P0C7V0 271 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 HNRNPCL4P0DMR1 293 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 HOXB6P17509 224 aaKnown RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 ITGB6P18564 788 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 CCKBRP32239 447 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 NLRP5P59047 1200 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 MRPS34P82930 218 aaKnown RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 PDE1CQ14123 709 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 SETMARQ53H47 684 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 PRSS57Q6UWY2 283 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 ARMC9Q7Z3E5 817 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 RNF168Q8IYW5 571 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 TTC39CQ8N584 583 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 PCDH20Q8N6Y1 951 aaKnown RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 C1orf131Q8NDD1 294 aaKnown RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 LMO3Q8TAP4 145 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 GRAMD2BQ96HH9 432 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 NUDCD1Q96RS6 583 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 SEPT5Q99719 369 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 PDZD7Q9H5P4 517 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 SYNCQ9H7C4 482 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 SEBOXQ9HB31 216 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 C1RLQ9NZP8 487 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 STK39Q9UEW8 545 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 FBXW11Q9UKB1 542 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 PCDHAC2Q9Y5I4 1007 aa4.84□□□□□ -1.63
HMGB1P38-201ENST00000490557 KANSL1LA0AUZ9 987 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 SRRM3A6NNA2 597 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 PTGES3LE9PB15 166 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 ATP2A1O14983 1001 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 MID1O15344 667 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 HS6ST1O60243 411 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 MCM3P25205 808 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 FASLGP48023 281 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 GAS1P54826 345 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 TAS2R38P59533 333 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 EEF1A2Q05639 463 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 CDC16Q13042 620 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 COASYQ13057 564 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 MYLK3Q32MK0 819 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 HYIQ5T013 277 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 ITPRIPL1Q6GPH6 555 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 UNQ6126/PRO20091Q6UXV3 157 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 RBM23Q86U06 439 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 CHERPQ8IWX8 916 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 HACE1Q8IYU2 909 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 RNF113BQ8IZP6 322 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 SRBD1Q8N5C6 995 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 WDTC1Q8N5D0 677 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 GPATCH11Q8N954 259 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 SMRP1Q8NCR6 262 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 OR2AK2Q8NG84 335 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 OR1J2Q8NGS2 313 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 OR8K5Q8NH50 307 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 SECTM1Q8WVN6 248 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms