RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 HMGCLL1Q8TB92 370 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 NOC3LQ8WTT2 800 aaKnown RBP2.91□□□□□ -1.94
CPSF3-205ENST00000489629 GRAMD2BQ96HH9 432 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 ZSCAN31Q96LW9 406 aaPredicted RBP2.91□□□□□ -1.94
CPSF3-205ENST00000489629 KLHL15Q96M94 604 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 ARPC5LQ9BPX5 153 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 SEBOXQ9HB31 216 aaPredicted RBP2.91□□□□□ -1.94
CPSF3-205ENST00000489629 CEPT1Q9Y6K0 416 aa2.91□□□□□ -1.94
CPSF3-205ENST00000489629 IGLV5-45A0A087WSX0 123 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 TEX13CA0A0J9YWL9 993 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ZCWPW2A0A1B0GU75 182 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 BLOC1S5-TXNDC5H3BN57 136 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 SPINT2O43291 252 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 SYNGR3O43761 229 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 EXTL3O43909 919 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 PCDH7O60245 1069 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 PIP5K1CO60331 668 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 FAM106CPP0CH98 169 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 KRT5P13647 590 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 TAS2R38P59533 333 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 GNB1P62873 340 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 CSNK2A1P68400 391 aaPredicted RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 FOXM1Q08050 763 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 PPFIA1Q13136 1202 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 DECR1Q16698 335 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ZC2HC1BQ5TFG8 222 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF497Q6ZNH5 498 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 RRM2BQ7LG56 351 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 LRRTM4Q86VH4 590 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 APLFQ8IW19 511 aaPredicted RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 SPEM1Q8N4L4 309 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ACVR1CQ8NER5 493 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 CSNK2A3Q8NEV1 391 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 DBF4BQ8NFT6 615 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 OR52I2Q8NH67 350 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 THAP6Q8TBB0 222 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 TMEM190Q8WZ59 177 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ORAI1Q96D31 301 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 QRFPRQ96P65 431 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 RPS6KC1Q96S38 1066 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 MOV10L1Q9BXT6 1211 aaKnown RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 IFIH1Q9BYX4 1025 aaKnown RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 GPR63Q9BZJ6 419 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 TFB2MQ9H5Q4 396 aaKnown RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 BRF2Q9HAW0 419 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 PPP1R14DQ9NXH3 145 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF624Q9P2J8 865 aaPredicted RBP2.9□□□□□ -1.95
CPSF3-205ENST00000489629 UTYO14607 1347 aa2.9□□□□□ -1.95
CPSF3-205ENST00000489629 SMIM1B2RUZ4 78 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 USP17L23D6RBM5 183 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 VCYO14598 125 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 EGFP01133 1207 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 POLR2CP19387 275 aaPredicted RBP2.89□□□□□ -1.95
CPSF3-205ENST00000489629 CDAP32320 146 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 HALP42357 657 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 GNAQP50148 359 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 CAMK1Q14012 370 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ALG11Q2TAA5 492 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 PRICKLE4Q2TBC4 344 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 GRAMD1BQ3KR37 738 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 USP41Q3LFD5 358 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 TMEM35AQ53FP2 167 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 WDR38Q5JTN6 314 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 C6orf141Q5SZD1 244 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 SFMBT2Q5VUG0 894 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 NAA35Q5VZE5 725 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF772Q68DY9 489 aaPredicted RBP2.89□□□□□ -1.95
CPSF3-205ENST00000489629 OR7E24Q6IFN5 339 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 TTI2Q6NXR4 508 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ATF7IPQ6VMQ6 1270 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 RAD9BQ6WBX8 426 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF704Q6ZNC4 412 aaPredicted RBP2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ADAD2Q8NCV1 583 aaKnown RBP2.89□□□□□ -1.95
CPSF3-205ENST00000489629 TAAR8Q969N4 342 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 LINGO1Q96FE5 620 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF354BQ96LW1 612 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 NEUROD6Q96NK8 337 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 MPHOSPH8Q99549 860 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 FSD1Q9BTV5 496 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 LTB4R2Q9NPC1 389 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 MPP6Q9NZW5 540 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 POLG2Q9UHN1 485 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 ACSL5Q9ULC5 683 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 COMMD10Q9Y6G5 202 aa2.89□□□□□ -1.95
CPSF3-205ENST00000489629 EIF3FO00303 357 aaPredicted RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 TNPO2O14787 897 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 CTSVO60911 334 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 SEC31AO94979 1220 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 IFIT1P09914 478 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 ERVK-10P10266 1014 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF23P17027 643 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 GGT5P36269 586 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 APOBEC1P41238 236 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 ARCN1P48444 511 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 CLDN20P56880 219 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 FOXD4Q12950 439 aaPredicted RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 GRIK2Q13002 908 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 C18orf63Q68DL7 685 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 SIGIRRQ6IA17 410 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms