RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 BTN2A3PQ96KV6 586 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 TCAF1Q9Y4C2 921 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 TRMUO75648 421 aaKnown RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 SLC6A2P23975 617 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 PEX2P28328 305 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 HTR7P34969 479 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 GDF10P55107 478 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 ACAP2Q15057 778 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 AP5B1Q2VPB7 878 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 TREML2Q5T2D2 321 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 ANKS1BQ7Z6G8 1248 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 LEMD2Q8NC56 503 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 AP3S1Q92572 193 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 SSR3Q9UNL2 185 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 C2CD4BA6NLJ0 364 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 SKP1P63208 163 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 MED22Q15528 200 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 VSTM1Q6UX27 236 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 RTL3Q8N8U3 475 aaKnown RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 FNDC11Q9BVV2 318 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 SMPD3Q9NY59 655 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 RAPGEFL1Q9UHV5 662 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 RIPK3Q9Y572 518 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 GNPDA1P46926 289 aa16.39■□□□□ 0.22
COL7A1-210ENST00000487017 TAF13Q15543 124 aa16.39■□□□□ 0.22
COL7A1-210ENST00000487017 ATG14Q6ZNE5 492 aa16.39■□□□□ 0.22
COL7A1-210ENST00000487017 PPM1MQ96MI6 270 aa16.39■□□□□ 0.22
COL7A1-210ENST00000487017 RBM4BQ9BQ04 359 aaKnown RBP16.39■□□□□ 0.22
COL7A1-210ENST00000487017 RBM4Q9BWF3 364 aaKnown RBP16.39■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF490Q9ULM2 529 aaPredicted RBP16.39■□□□□ 0.22
COL7A1-210ENST00000487017 TCEA3O75764 348 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 MAP2K5Q13163 448 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 SLC25A24Q6NUK1 477 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 RFWD3Q6PCD5 774 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 RASAL3Q86YV0 1011 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 CYP4X1Q8N118 509 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 C10orf82Q8WW14 230 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 IRGQQ8WZA9 623 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 COL26A1Q96A83 441 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 MYO19Q96H55 970 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 FTHL17Q9BXU8 183 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 AJAP1Q9UKB5 411 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PCDHB1Q9Y5F3 818 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 U3KQV3 271 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 CARNS1A5YM72 827 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 SLC9A3R1O14745 358 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 SERPINB7O75635 380 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 FOXN2P32314 431 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 NRG1Q02297 640 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PEX6Q13608 980 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 IRAK1BP1Q5VVH5 260 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PTCHD4Q6ZW05 846 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 UBE2R2Q712K3 238 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 TMEM39AQ9NV64 488 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 KRT74Q7RTS7 529 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 ZNF655Q8N720 491 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 OR4K2Q8NGD2 314 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 AHCYL2Q96HN2 611 aaKnown RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 IGKV6D-41A0A0C4DH26 115 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 OR6C75A6NL08 312 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 E9PAM4 449 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PSMD11O00231 422 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 FADS2O95864 444 aaKnown RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PRG2P13727 222 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 COPZ1P61923 177 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 RALGPS1Q5JS13 557 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 CLEC6AQ6EIG7 209 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 TAPT1Q6NXT6 567 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 UBR7Q8N806 425 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 ZNF607Q96SK3 696 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 LRTM1Q9HBL6 345 aa16.39■□□□□ 0.21
COL7A1-210ENST00000487017 TRMT13Q9NUP7 481 aaKnown RBP16.39■□□□□ 0.21
COL7A1-210ENST00000487017 PGK1P00558 417 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 LIPEQ05469 1076 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 RALGPS2Q86X27 583 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 MCFD2Q8NI22 146 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 GPR152Q8TDT2 470 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 EIF2B3Q9NR50 452 aaKnown RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 PRMT5O14744 637 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 GALK1P51570 392 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 OLR1P78380 273 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 SMAD3P84022 425 aaKnown RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 IKBKEQ14164 716 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 GALNT18Q6P9A2 607 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 PPCDCQ96CD2 204 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 ZNF558Q96NG5 402 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 GATA5Q9BWX5 397 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 COL20A1Q9P218 1284 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 PLSCR1O15162 318 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 USP41Q3LFD5 358 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 PYROXD2Q8N2H3 581 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 CLHC1Q8NHS4 586 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 TEX47Q8TBZ9 253 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 TEFMQ96QE5 360 aaKnown RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 S100A13Q99584 98 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 HMX1Q9NP08 348 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-210ENST00000487017 TIMM22Q9Y584 194 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 HAT1O14929 419 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms