RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PSPC1Q8WXF1 523 aaKnown RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 PIGTQ969N2 578 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 NR1H4Q96RI1 486 aaPredicted RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 AGXT2Q9BYV1 514 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 IFIH1Q9BYX4 1025 aaKnown RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 KIF9Q9HAQ2 790 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 SCRT2Q9NQ03 307 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 ASAH2Q9NR71 780 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 ACSS1Q9NUB1 689 aaPredicted RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 HAO1Q9UJM8 370 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 MKLN1Q9UL63 735 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 CAMK2AQ9UQM7 478 aa3.78□□□□□ -1.8
VPS41-213ENST00000485955 AAR2Q9Y312 384 aaKnown RBP3.78□□□□□ -1.8
VPS41-213ENST00000485955 RIMBP3CA6NJZ7 1639 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 RIMBP3BA6NNM3 1639 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 RIMBP3Q9UFD9 1639 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 TGFB1I1O43294 461 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 CGAP01215 116 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 IL7RP16871 459 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 NR1D1P20393 614 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 EPHA8P29322 1005 aaPredicted RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 CTCFP49711 727 aaPredicted RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 HILS1P60008 231 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 CXorf66Q5JRM2 361 aaPredicted RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 KCTD8Q6ZWB6 473 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 SRBD1Q8N5C6 995 aaKnown RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 NFKBIDQ8NI38 313 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 APBB2Q92870 758 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 GTF3C6Q969F1 213 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 IGSF8Q969P0 613 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 RRP36Q96EU6 259 aaKnown RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 ACOX2Q99424 681 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 POLR3CQ9BUI4 534 aaPredicted RBP3.77□□□□□ -1.81
VPS41-213ENST00000485955 WASH6PQ9NQA3 447 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 SLC13A4Q9UKG4 626 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 GJD2Q9UKL4 321 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 ARHGAP26Q9UNA1 814 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 CRYL1Q9Y2S2 319 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 KIAA1210Q9ULL0 1709 aa3.77□□□□□ -1.81
VPS41-213ENST00000485955 PTPRCP08575 1304 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 CCDC196A0A1B0GTZ2 297 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 CTAGE9A4FU28 777 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 SPINT2O43291 252 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 CTAGE8P0CG41 777 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 ICAM3P32942 547 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 PITX1P78337 314 aaPredicted RBP3.76□□□□□ -1.81
VPS41-213ENST00000485955 FOXM1Q08050 763 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 FOXD4Q12950 439 aaPredicted RBP3.76□□□□□ -1.81
VPS41-213ENST00000485955 GRIK2Q13002 908 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 ZNF234Q14588 700 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 ZRSR2Q15696 482 aaKnown RBP3.76□□□□□ -1.81
VPS41-213ENST00000485955 CEP85LQ5SZL2 805 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 ADAM5Q6NVV9 412 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 FAM171BQ6P995 826 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 DPPA4Q7L190 304 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 CTAGE4Q8IX94 777 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 CNTROBQ8N137 903 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 OR14L1PQ8NHC6 308 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 FBXO17Q96EF6 278 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 SAAL1Q96ER3 474 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 TMEM47Q9BQJ4 181 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 LRRC1Q9BTT6 524 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 PRKRIP1Q9H875 184 aaPredicted RBP3.76□□□□□ -1.81
VPS41-213ENST00000485955 ABI3Q9P2A4 366 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 FAF1Q9UNN5 650 aaPredicted RBP3.76□□□□□ -1.81
VPS41-213ENST00000485955 DLGAP4Q9Y2H0 992 aa3.76□□□□□ -1.81
VPS41-213ENST00000485955 ZG16O60844 167 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 WDR1O75083 606 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 XBP1P17861 261 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 CDKN1AP38936 164 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 APOBEC1P41238 236 aaKnown RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 HARS2P49590 506 aaKnown RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 TAS2R38P59533 333 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 RUNX1T1Q06455 604 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 TBX2Q13207 712 aaPredicted RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 DECR1Q16698 335 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 TMEM95Q3KNT9 176 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 FRG2Q64ET8 278 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 C18orf63Q68DL7 685 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 INO80CQ6PI98 192 aaPredicted RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 SMAP1Q8IYB5 467 aaPredicted RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 METTL27Q8N6F8 245 aaPredicted RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 ZNF501Q96CX3 271 aaPredicted RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 ZNF583Q96ND8 569 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 QRFPRQ96P65 431 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 PCGF1Q9BSM1 259 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 CHMP4AQ9BY43 222 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 ZNF696Q9H7X3 374 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 SLC28A3Q9HAS3 691 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 LTB4R2Q9NPC1 389 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 HCFC1R1Q9NWW0 138 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 PDP2Q9P2J9 529 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 CNOT8Q9UFF9 292 aaKnown RBP3.75□□□□□ -1.81
VPS41-213ENST00000485955 ACSL5Q9ULC5 683 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 KLHL20Q9Y2M5 609 aa3.75□□□□□ -1.81
VPS41-213ENST00000485955 TTC36A6NLP5 189 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 ZNHIT1O43257 154 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 NKX2-2O95096 273 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 UBL4AP11441 157 aa3.74□□□□□ -1.81
VPS41-213ENST00000485955 FASLGP48023 281 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms