RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NFATC4Q14934 902 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 PPP1R7Q15435 360 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 SLC14A2Q15849 920 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ZNF423Q2M1K9 1284 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 COX20Q5RI15 118 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 C16orf46Q6P387 395 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ZNF449Q6P9G9 518 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 C4orf22Q6V702 233 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 GCNT7Q6ZNI0 430 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ABI3BPQ7Z7G0 1075 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 GALNT13Q8IUC8 556 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 NRSN1Q8IZ57 195 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 SLC35F6Q8N357 371 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 FSTL5Q8N475 847 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 OTUD6BQ8N6M0 293 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 OR56A4Q8NGH8 313 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 C1orf54Q8WWF1 131 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ALG3Q92685 438 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 IMP4Q96G21 291 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 DCUN1D1Q96GG9 259 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 FCRL5Q96RD9 977 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 TTC1Q99614 292 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 TBL1YQ9BQ87 522 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CDH19Q9H159 772 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 FAM83DQ9H4H8 585 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 TRABDQ9H4I3 376 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 C10orf88Q9H8K7 445 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 LRRC40Q9H9A6 602 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CARS2Q9HA77 564 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 IL21RQ9HBE5 538 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CYP4F12Q9HCS2 524 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP40-216ENST00000485943 PAK5Q9P286 719 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 GULP1Q9UBP9 304 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 FEZ2Q9UHY8 353 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 ZNF711Q9Y462 761 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 PCDHGB2Q9Y5G2 931 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 SLC30A1Q9Y6M5 507 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CACNA1EQ15878 2313 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 SPTY2D1-AS1A0A0U1RR47 76 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 A0A1W2PR77 199 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 F8W8V4 182 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 AP3B1O00203 1094 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 RAD51BO15315 384 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 INPP4BO15327 924 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 DDX3YO15523 660 aaKnown RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 AQP9O43315 295 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TNFSF14O43557 240 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PCDHGA12O60330 932 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 SLC25A14O95258 325 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 KCNK5O95279 499 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TRIM16O95361 564 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PEX11BO96011 259 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 WNT1P04628 370 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 MYCLP1P12525 358 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 TCP1P17987 556 aaKnown RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 TGM1P22735 817 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 CASQ1P31415 396 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 AKT1P31749 480 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PPARGP37231 505 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 HADHAP40939 763 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 GNPDA1P46926 289 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TERF1P54274 439 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ITGA9Q13797 1035 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TAZQ16635 292 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PARP6Q2NL67 630 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 WSCD2Q2TBF2 565 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ARTNQ5T4W7 220 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PNCKQ6P2M8 343 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 CRTC1Q6UUV9 634 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 Q6ZVL8 140 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 MARK2Q7KZI7 788 aaKnown RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 TSPAN33Q86UF1 283 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 HEATR4Q86WZ0 1026 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ZSWIM9Q86XI8 627 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PHYKPLQ8IUZ5 450 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TP53I13Q8NBR0 393 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 TMEM145Q8NBT3 493 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 PIH1D2Q8WWB5 315 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ATG4AQ8WYN0 398 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 TSACCQ96A04 125 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 MAGOHBQ96A72 148 aaKnown RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 FAM131CQ96AQ9 280 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 DTD2Q96FN9 168 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 CAPZA3Q96KX2 299 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 NAPGQ99747 312 aaPredicted RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 ZSCAN5AQ9BUG6 496 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 RIOK2Q9BVS4 552 aaKnown RBP8.01□□□□□ -1.13
USP40-216ENST00000485943 GSDMCQ9BYG8 508 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 DPEP2Q9H4A9 486 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 OSGEPL1Q9H4B0 414 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 EBF2Q9HAK2 575 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 MAGEE1Q9HCI5 957 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 BPIFA1Q9NP55 256 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 SIRPGQ9P1W8 387 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ZNHIT2Q9UHR6 403 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 CRLS1Q9UJA2 301 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ANAPC5Q9UJX4 755 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 ZKSCAN5Q9Y2L8 839 aa8.01□□□□□ -1.13
USP40-216ENST00000485943 LRRK1Q38SD2 2015 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms