RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MICALCLQ6ZW33 695 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 NLRP8Q86W28 1048 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 SLC41A1Q8IVJ1 513 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 TP53I13Q8NBR0 393 aaPredicted RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 ZNF398Q8TD17 642 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 CENPTQ96BT3 561 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 HSPA12BQ96MM6 686 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 TTC25Q96NG3 672 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 MYOCQ99972 504 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 CDC42EP4Q9H3Q1 356 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 SEMA4AQ9H3S1 761 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 VPS37BQ9H9H4 285 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 EBF2Q9HAK2 575 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 PLAC1Q9HBJ0 212 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 LRRC4CQ9HCJ2 640 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 MBNL1Q9NR56 388 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 C20orf96Q9NUD7 363 aaPredicted RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 NINJ2Q9NZG7 142 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 DMTF1Q9Y222 760 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 PCDHGA2Q9Y5H1 932 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 SLC30A1Q9Y6M5 507 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 TNRC6BQ9UPQ9 1833 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 OR51F1A6NGY5 319 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 GOLGA8KD6RF30 607 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PRAMEF26H0Y7S4 382 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 GOLGA8TH3BQL2 631 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 GAPDHSO14556 408 aaPredicted RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A9O60656 530 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 RHOBTB1O94844 696 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PRAMEF1O95521 474 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A6P19224 532 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 ITGALP20701 1170 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A1P22309 533 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A4P22310 534 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 CD27P26842 260 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 MAOBP27338 520 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 ARNTP27540 789 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A3P35503 534 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A5P35504 534 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 ARCN1P48444 511 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 DHPSP49366 369 aaPredicted RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 PMS2P54278 862 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 GPX6P59796 221 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 CACNG1Q06432 222 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 THOC5Q13769 683 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 SMAD1Q15797 465 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 PLK5Q496M5 336 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 MAP9Q49MG5 647 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 SPDYCQ5MJ68 293 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PNCKQ6P2M8 343 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 EMBQ6PCB8 327 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 AFTPHQ6ULP2 937 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 TRMT10CQ7L0Y3 403 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 ARMCX6Q7L4S7 300 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PTAR1Q7Z6K3 402 aaPredicted RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 UNC5BQ8IZJ1 945 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 RGL4Q8IZJ4 473 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PELI3Q8N2H9 469 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 TRAM1L1Q8N609 369 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PLA2G15Q8NCC3 412 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 DENND6BQ8NEG7 585 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 OR4L1Q8NH43 312 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 GSDMBQ8TAX9 411 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 DTX3LQ8TDB6 740 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 AENQ8WTP8 325 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 SERAC1Q96JX3 654 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 AGAP2Q99490 1192 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 KLF6Q99612 283 aaPredicted RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 ZSCAN5AQ9BUG6 496 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 TXLNGYQ9BZA5 131 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 FAM96AQ9H5X1 160 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 ASB8Q9H765 288 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A7Q9HAW7 530 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A10Q9HAW8 530 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 UGT1A8Q9HAW9 530 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 PPANQ9NQ55 473 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 IL1RAPL1Q9NZN1 696 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 EIF2B4Q9UI10 523 aaKnown RBP12.17□□□□□ -0.46
SDC1-206ENST00000482879 CA5BQ9Y2D0 317 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 HS3ST3A1Q9Y663 406 aa12.17□□□□□ -0.46
SDC1-206ENST00000482879 TDRD6O60522 2096 aaKnown RBP12.16□□□□□ -0.46
SDC1-206ENST00000482879 FADS2P1A8MWK0 482 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 K7ESM1 405 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 FPGTO14772 594 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 LILRB5O75023 590 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ERLIN1O75477 346 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 SPAG6O75602 509 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ACSL3O95573 720 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 PYGLP06737 847 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ERVK-10P10266 1014 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 TSHRP16473 764 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 FOXN2P32314 431 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 IGFALSP35858 605 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 PTGER3P43115 390 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 CLDN2P57739 230 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 NFATC2Q13469 925 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ITGA9Q13797 1035 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 SIM2Q14190 667 aaPredicted RBP12.16□□□□□ -0.46
SDC1-206ENST00000482879 FRG1Q14331 258 aaKnown RBP12.16□□□□□ -0.46
SDC1-206ENST00000482879 INPP5AQ14642 412 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms