RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 NSRP1Q9H0G5 558 aaKnown RBP12.78□□□□□ -0.36
VPS13D-205ENST00000473099 BPIFA1Q9NP55 256 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 PCDH12Q9NPG4 1184 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 KCTD5Q9NXV2 234 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 ACOT9Q9Y305 439 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 VWA7Q9Y334 891 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 PCDHB1Q9Y5F3 818 aa12.78□□□□□ -0.36
VPS13D-205ENST00000473099 TRBV5-4A0A0C4DH59 114 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 GMNCA6NCL1 334 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 H3BMM5 538 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 BIRC5O15392 142 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 SYNCRIPO60506 623 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PRAMEF1O95521 474 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ADH1BP00325 375 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ESR1P03372 595 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PYGLP06737 847 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ZNF7P17097 686 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 NTSR1P30989 418 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 MMP12P39900 470 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ETV4P43268 484 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 KIR2DL1P43626 348 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 SOX9P48436 509 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 SPINT3P49223 89 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 TAS2R39P59534 338 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 MRPS21P82921 87 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 GRSF1Q12849 480 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ITIH4Q14624 930 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 STARD3Q14849 445 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 LRRC14Q15048 493 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 CCDC85BQ15834 202 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 FBXO43Q4G163 708 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 TMEM196Q5HYL7 178 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 HECTD2Q5U5R9 776 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 NAIF1Q69YI7 327 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 FBXL19Q6PCT2 694 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PARS2Q7L3T8 475 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 CMC1Q7Z7K0 106 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 CLEC14AQ86T13 490 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 TBC1D1Q86TI0 1168 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 TSPAN33Q86UF1 283 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 SLC41A1Q8IVJ1 513 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 NRSN1Q8IZ57 195 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 RBFAQ8N0V3 343 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 RAB3IL1Q8TBN0 382 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 SREK1Q8WXA9 508 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 LPGAT1Q92604 370 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 EID2BQ96D98 161 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 FAM111AQ96PZ2 611 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 OMDQ99983 421 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PAIP2Q9BPZ3 127 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 AARSD1Q9BTE6 412 aaKnown RBP12.77□□□□□ -0.37
VPS13D-205ENST00000473099 HDAC8Q9BY41 377 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 MTG2Q9H4K7 406 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 ASB8Q9H765 288 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 IL26Q9NPH9 171 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PRSS16Q9NQE7 514 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 CACNA2D2Q9NY47 1150 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 TAS2R13Q9NYV9 303 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 LIMD1Q9UGP4 676 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 PIAS3Q9Y6X2 628 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 XIRP2A4UGR9 3374 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 C5orf42Q9H799 3197 aa12.77□□□□□ -0.37
VPS13D-205ENST00000473099 DOCK9Q9BZ29 2069 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 UBA6A0AVT1 1052 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-205ENST00000473099 AGAP14A8MT82 685 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 F8W8V4 182 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 K7EQS6 105 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 IL1BP01584 269 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 C1SP09871 688 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 ELFN1P0C7U0 828 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CHRM1P11229 460 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-205ENST00000473099 LHCGRP22888 699 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 RPS3P23396 243 aaKnown RBP eCLIP12.76□□□□□ -0.37
VPS13D-205ENST00000473099 ABCG1P45844 678 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 PTSQ03393 145 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 NFATC2Q13469 925 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 SEMA3AQ14563 771 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 FAM83EQ2M2I3 478 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 TTC19Q6DKK2 380 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-205ENST00000473099 PSAPL1Q6NUJ1 521 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 UGT3A1Q6NUS8 523 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 KLC3Q6P597 504 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 FAM151BQ6UXP7 276 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 TAS2R42Q7RTR8 314 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 GDAP1Q8TB36 358 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 RDH11Q8TC12 318 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 ZNF398Q8TD17 642 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 LRRC8CQ8TDW0 803 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 HEXDCQ8WVB3 486 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CHMP6Q96FZ7 201 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 GABRG3Q99928 467 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 RSPH9Q9H1X1 276 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CAB39LQ9H9S4 337 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 SYTL2Q9HCH5 934 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 SLC2A4RGQ9NR83 387 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 SLC17A7Q9P2U7 560 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CRLS1Q9UJA2 301 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CRYL1Q9Y2S2 319 aa12.76□□□□□ -0.37
VPS13D-205ENST00000473099 CCDC189A1A4V9 331 aa12.75□□□□□ -0.37
VPS13D-205ENST00000473099 GAPDHSO14556 408 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms