RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ITKQ08881 620 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 FGL2Q14314 439 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 TEX44Q53QW1 395 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 KYAT3Q6YP21 454 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 GCNT7Q6ZNI0 430 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 Q6ZSR6 202 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 JAMLQ86YT9 394 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CAMK1DQ8IU85 385 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CDKL3Q8IVW4 592 aaPredicted RBP11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 FBXO39Q8N4B4 442 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CNTD1Q8N815 330 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 DENND6BQ8NEG7 585 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 HTR3CQ8WXA8 447 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 ECHDC3Q96DC8 303 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 NSMCE3Q96MG7 304 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 VAT1Q99536 393 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 FAM118BQ9BPY3 351 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CEP41Q9BYV8 373 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 NOD2Q9HC29 1040 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 GPR27Q9NS67 375 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 TTLL3Q9Y4R7 772 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CSNK1G3Q9Y6M4 447 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CELSR2Q9HCU4 2923 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 LRBAP50851 2863 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 TTC24A2A3L6 582 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 POM121BA6NF01 834 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 IGLON5A6NGN9 336 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 TRAFD1O14545 582 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 FPGTO14772 594 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 NVLO15381 856 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 SOCS5O75159 536 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 ZNF189O75820 626 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 ATP1A1P05023 1023 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 CES1P23141 567 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 RBL1P28749 1068 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 UGT1A5P35504 534 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 RABIFP47224 123 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 PDX1P52945 283 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 WASHC5Q12768 1159 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 EIF3IQ13347 325 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 PERM1Q5SV97 790 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 CFAP58Q5T655 872 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 BRAT1Q6PJG6 821 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 CRTC1Q6UUV9 634 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 RAB11FIP2Q7L804 512 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 ARRDC2Q8TBH0 407 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 AGAP3Q96P47 875 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 KLF6Q99612 283 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 DNAJC28Q9NX36 388 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 R3HDM2Q9Y2K5 976 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 UNC13CQ8NB66 2214 aa11.91□□□□□ -0.5
SQSTM1-206ENST00000466342 CENPEQ02224 2701 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SPTY2D1-AS1A0A0U1RR47 76 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 A0A1W2PQ67 120 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 TOR1BO14657 336 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 RAD51BO15315 384 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 HTRA2O43464 458 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 CEP104O60308 925 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 TIMP2P16035 220 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 GNG11P61952 73 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 NIPAL4Q0D2K0 466 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 ELP6Q0PNE2 266 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 KCNAB2Q13303 367 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SPIDRQ14159 915 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SIX1Q15475 284 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 ZNF542PQ5EBM4 170 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 DARS2Q6PI48 645 aaKnown RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 PTAR1Q7Z6K3 402 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 ZSWIM9Q86XI8 627 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SLC22A18ASQ8N1D0 253 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SLC35B2Q8TB61 432 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 MAIP1Q8WWC4 291 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 SPOCK2Q92563 424 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 CENPTQ96BT3 561 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 PBKQ96KB5 322 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 TEKT5Q96M29 485 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 OSBPL9Q96SU4 736 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 FERMT1Q9BQL6 677 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 C1QTNF7Q9BXJ2 289 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 FRMD8P1Q9BZ68 369 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 C10orf88Q9H8K7 445 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 KLHL8Q9P2G9 620 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 TUBD1Q9UJT1 453 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 ZKSCAN5Q9Y2L8 839 aa11.9□□□□□ -0.5
SQSTM1-206ENST00000466342 MED13Q9UHV7 2174 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 TMX2-CTNND1H3BSU7 103 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 CASC3O15234 703 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 KCNN4O15554 427 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 SPINT1O43278 529 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 LIASO43766 372 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 TM7SF2O76062 418 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 FGGP02679 453 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 CSF2P04141 144 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 MMP2P08253 660 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 WT1P19544 449 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 XPAP23025 273 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 CD68P34810 354 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 CD86P42081 329 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 PFN3P60673 137 aa11.89□□□□□ -0.51
SQSTM1-206ENST00000466342 YPEL5P62699 121 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms