RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NOL9Q5SY16 702 aaKnown RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 HEATR4Q86WZ0 1026 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 SCML4Q8N228 414 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 MFSD4AQ8N468 514 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 CNIH3Q8TBE1 160 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 SEPT1Q8WYJ6 367 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 ROPN1LQ96C74 230 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 TUBB1Q9H4B7 451 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 EML4Q9HC35 981 aaKnown RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 ANKMY1Q9P2S6 941 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 KLHL3Q9UH77 587 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 SUN2Q9UH99 717 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 FBXO5Q9UKT4 447 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 OR51F1A6NGY5 319 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 DFFAO00273 331 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 LEPRP48357 1165 aaKnown RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 SLC25A52Q3SY17 297 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 GJC2Q5T442 439 aaPredicted RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 UBE2UQ5VVX9 321 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 LAIR2Q6ISS4 152 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 PLEKHG7Q6ZR37 379 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 LINC00523Q86TU6 105 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 KIAA2013Q8IYS2 634 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 OR10Q1Q8NGQ4 319 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 PSD2Q9BQI7 771 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 CARS2Q9HA77 564 aaKnown RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 PCDHA9Q9Y5H5 950 aa11.68□□□□□ -0.54
CPSF3-202ENST00000460593 OAS3Q9Y6K5 1087 aaKnown RBP11.68□□□□□ -0.54
CPSF3-202ENST00000460593 ANKRD34BA5PLL1 514 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 TOMM70O94826 608 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 COL2A1P02458 1487 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 THRBP10828 461 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 HSD17B1P14061 328 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PTPRAP18433 802 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 IGFBP6P24592 240 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 NPY2RP49146 381 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 CD47Q08722 323 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 SELPLGQ14242 412 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 LAPTM4AQ15012 233 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PAFAH1B3Q15102 231 aaKnown RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 UNC50Q53HI1 259 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PKN3Q6P5Z2 889 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 SPATC1Q76KD6 591 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 THAP5Q7Z6K1 395 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 MIER2Q8N344 545 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 AFAP1L2Q8N4X5 818 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 CHDHQ8NE62 594 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 TWIST2Q8WVJ9 160 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 FAR2Q96K12 515 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 TEX13BQ9BXU2 312 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 AMBRA1Q9C0C7 1298 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 C2orf40Q9H1Z8 148 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 SMOC2Q9H3U7 446 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 GOLGA2P5Q9HBQ8 144 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 INTS10Q9NVR2 710 aaKnown RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 ENPP5Q9UJA9 477 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 M0R3G1 203 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 MTPNP58546 118 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 UFM1P61960 85 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 BST2Q10589 180 aaKnown RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 NBPF12Q5TAG4 269 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 UGT3A1Q6NUS8 523 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 USP43Q70EL4 1123 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PAGE2Q7Z2X7 111 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 ADCK1Q86TW2 530 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 OR7A2PQ8NGA2 310 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 EDEM1Q92611 657 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 HBEGFQ99075 208 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 GMLQ99445 158 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 KIFC1Q9BW19 673 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 TRIT1Q9H3H1 467 aaKnown RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 GTF2IRD1Q9UHL9 959 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 AKT3Q9Y243 479 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 CRYL1Q9Y2S2 319 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 CSADQ9Y600 493 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 U3KQV3 271 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 COL11A1P12107 1806 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 UPK1AO00322 258 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 DLGAP3O95886 979 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 JUNBP17275 347 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 NEK2P51955 445 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 BACE1P56817 501 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 HACD2Q6Y1H2 254 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 STRADAQ7RTN6 431 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 FBXO30Q8TB52 745 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 FRS2Q8WU20 508 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PTERQ96BW5 349 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PPM1MQ96MI6 270 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 HOPXQ9BPY8 73 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 GDAP2Q9NXN4 497 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 FBXO10Q9UK96 956 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 PDE10AQ9Y233 779 aa11.67□□□□□ -0.54
CPSF3-202ENST00000460593 CAB39Q9Y376 341 aaPredicted RBP11.67□□□□□ -0.54
CPSF3-202ENST00000460593 TBX1O43435 398 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 UGT2B11O75310 529 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 TXNP10599 105 aaKnown RBP11.66□□□□□ -0.54
CPSF3-202ENST00000460593 GSTM2P28161 218 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 CDKN2DP55273 166 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 DNAJB13P59910 316 aa11.66□□□□□ -0.54
CPSF3-202ENST00000460593 IL1RL1Q01638 556 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms