RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ENPP7	Q6UWV6	458 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	B4GALNT4	Q76KP1	1039 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	CASS4	Q9NQ75	786 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	SLC17A4	Q9Y2C5	497 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	AQP9	O43315	295 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	TNFSF14	O43557	240 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	GM2A	P17900	193 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	PSMA3	P25788	255 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	ILF3	Q12906	894 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	HOOK3	Q86VS8	718 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	PDCD7	Q8N8D1	485 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	FAM181A	Q8N9Y4	354 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	MNS1	Q8NEH6	495 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	OR4C6	Q8NH72	309 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	COX14	Q96I36	57 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	IL22	Q9GZX6	179 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	SLC30A1	Q9Y6M5	507 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	CACNA1E	Q15878	2313 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	LRRK1	Q38SD2	2015 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	C5orf42	Q9H799	3197 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	GLYATL1P3	A0A0U1RQE8	302 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	FAM187A	A6NFU0	413 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	SCAMP1	O15126	338 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	METTL18	O95568	372 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	LDOC1	O95751	146 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	AGT	P01019	485 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	CLCNKA	P51800	687 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	GDF10	P55107	478 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	BASP1	P80723	227 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	E2F1	Q01094	437 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	ILF2	Q12905	390 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	EIF2B5	Q13144	721 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	PTK6	Q13882	451 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	IHH	Q14623	411 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	AARS2	Q5JTZ9	985 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	ZCCHC8	Q6NZY4	707 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	SETD7	Q8WTS6	366 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	COG1	Q8WTW3	980 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	FUBP1	Q96AE4	644 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	SCARF2	Q96GP6	870 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	OR2M4	Q96R27	311 aa		10.64	□□□□□ -0.71
UBR4-208	ENST00000459947	MAGEB16	A2A368	324 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947		H7C0S8	307 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	HK3	P52790	923 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	WHAMMP3	Q1A5X7	153 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	MAATS1	Q7Z4T9	603 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	GALNT13	Q8IUC8	556 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	RHBDD1	Q8TEB9	315 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	NAT6	Q93015	286 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	GLYATL1	Q969I3	302 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	WDR24	Q96S15	920 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	EYS	Q5T1H1	3165 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	LMO7DN	F2Z398	122 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	TM4SF5	O14894	197 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	PAM	P19021	973 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	DGLUCY	Q7Z3D6	616 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	SLC22A18AS	Q8N1D0	253 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	C10orf88	Q9H8K7	445 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	VPS37B	Q9H9H4	285 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	TRIM39	Q9HCM9	518 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	NLE1	Q9NVX2	485 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	CA5B	Q9Y2D0	317 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	SPO11	Q9Y5K1	396 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	PRSS38	A1L453	326 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947		A8MX80	341 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	NOVA1	P51513	510 aa	Known RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	CLPP	Q16740	277 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	DNAJC21	Q5F1R6	531 aa	Known RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	PCID2	Q5JVF3	399 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	LRRC8B	Q6P9F7	803 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	KANSL1	Q7Z3B3	1105 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	HID1	Q8IV36	788 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	ZNF548	Q8NEK5	533 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	GORASP1	Q9BQQ3	440 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	STN1	Q9H668	368 aa	Known RBP	10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	SHOC2	Q9UQ13	582 aa		10.63	□□□□□ -0.71
UBR4-208	ENST00000459947	ASMTL	O95671	621 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	BPI	P17213	487 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	ITIH4	Q14624	930 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	ALG11	Q2TAA5	492 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	ZNF449	Q6P9G9	518 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	AFTPH	Q6ULP2	937 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	CEP128	Q6ZU80	1094 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	NYAP1	Q6ZVC0	841 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	KDELC2	Q7Z4H8	507 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	PPIL6	Q8IXY8	311 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	MPP5	Q8N3R9	675 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	BAHD1	Q8TBE0	780 aa	Predicted RBP	10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	TIMM29	Q9BSF4	260 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	NAT9	Q9BTE0	207 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	PCOLCE2	Q9UKZ9	415 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	UNC80	Q8N2C7	3258 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	OR5K4	A6NMS3	321 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	APRT	P07741	180 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	DGKA	P23743	735 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	ZNF140	P52738	457 aa	Predicted RBP	10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	GPS1	Q13098	491 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	CERS6	Q6ZMG9	384 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	SNX20	Q7Z614	316 aa		10.62	□□□□□ -0.71
UBR4-208	ENST00000459947	CREG2	Q8IUH2	290 aa		10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms