RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FNDC8Q8TC99 324 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CREB3L4Q8TEY5 395 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 LIPHQ8WWY8 451 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF764Q96H86 408 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GBP5Q96PP8 586 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC26A1Q9H2B4 701 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NOD2Q9HC29 1040 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PARVAQ9NVD7 372 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SOHLH2Q9NX45 425 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PSMC3IPQ9P2W1 217 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CACNG4Q9UBN1 327 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ARHGAP26Q9UNA1 814 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DIMT1Q9UNQ2 313 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CLDN16Q9Y5I7 305 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GMPPBQ9Y5P6 360 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 U3KQE9 123 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SNED1Q8TER0 1413 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ABCC4O15439 1325 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 A0A0U1RQV5 110 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MEX3AA1L020 520 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MAGEA13PA6NCF6 341 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 OR5K3A6NET4 321 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PRAMEF25A6NGN4 478 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNJ18B7U540 433 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 F5H0A9 414 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 LAD1O00515 517 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TRIM38O00635 465 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 LDLRAD4O15165 306 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PFDN6O15212 129 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ALOX15BO15296 676 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TADA2AO75478 443 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GPX5O75715 221 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GCNT3O95395 438 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ATP6V1G2O95670 118 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CSTAP01040 98 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TFRCP02786 760 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NR2F1P10589 423 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SRFP11831 508 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MLNP12872 115 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PFKLP17858 780 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 PTPN1P18031 435 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 G0S2P27469 103 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SLC7A1P30825 629 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 SLCO1A2P46721 670 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GNG10P50151 68 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CLCN5P51795 746 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 STAT2P52630 851 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ITGA8P53708 1063 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 YWHAEP62258 255 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TOB2Q14106 344 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 KCNJ12Q14500 433 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TIGD6Q17RP2 521 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MARCH8Q5T0T0 291 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TTC22Q5TAA0 569 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 C1orf146Q5VVC0 180 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NAA35Q5VZE5 725 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ANO7Q6IWH7 933 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DPY19L2P1Q6NXN4 242 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ESPNLQ6ZVH7 1005 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TRMT10CQ7L0Y3 403 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ARMCX2Q7L311 632 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM214BQ7L5A3 538 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 UBE3BQ7Z3V4 1068 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 GPR141Q7Z602 305 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TLK2Q86UE8 772 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 ZC3H18Q86VM9 953 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NUDT13Q86X67 352 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RIOX2Q8IUF8 465 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 VSTM4Q8IW00 320 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NELFCDQ8IXH7 590 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DTWD1Q8N5C7 304 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RNF152Q8N8N0 203 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NOA1Q8NC60 698 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HTRA1Q92743 480 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NMD3Q96D46 503 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HMCESQ96FZ2 354 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MAGED4Q96JG8 741 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CCDC17Q96LX7 622 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 UBL7Q96S82 380 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 AGAP2Q99490 1192 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 OSBPL6Q9BZF3 934 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MAGEH1Q9H213 219 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RIBC2Q9H4K1 309 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MARCH7Q9H992 704 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 FBRSL1Q9HCM7 1045 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 MID1IP1Q9NPA3 183 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 NRIP3Q9NQ35 241 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DECR2Q9NUI1 292 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 VPS54Q9P1Q0 977 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 TXNDC16Q9P2K2 825 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 HPSEQ9Y251 543 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 DLGAP4Q9Y2H0 992 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CYP46A1Q9Y6A2 500 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 CAPN6Q9Y6Q1 641 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 LAMB2P55268 1798 aa4.81□□□□□ -1.64
CCDC88A-209ENST00000456975 RTL9Q8NET4 1388 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 A0A1B0GVL5 298 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 SSU72P8A0A1W2PR75 194 aa4.8□□□□□ -1.64
CCDC88A-209ENST00000456975 NT5C1B-RDH14C9J2C7 533 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms