RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 FUBP1Q96AE4 644 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 NUS1Q96E22 293 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 PDXPQ96GD0 296 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 CCDC3Q9BQI4 270 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 WDR26Q9H7D7 661 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 KCTD5Q9NXV2 234 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 DTLQ9NZJ0 730 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 AMACRQ9UHK6 382 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 DRG1Q9Y295 367 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 DGKBQ9Y6T7 804 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 ASXL3Q9C0F0 2248 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 TMEM202A6NGA9 273 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 HACD1B0YJ81 288 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 PPP1R12AO14974 1030 aaPredicted RBP17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 TCEA3O75764 348 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 ITPKBP27987 946 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 TRIM23P36406 574 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 TRAF2Q12933 501 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 SNX1Q13596 522 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 ARHGEF7Q14155 803 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 SPIDRQ14159 915 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 CNGA3Q16281 694 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 TIGD7Q6NT04 549 aaPredicted RBP17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 NPNTQ6UXI9 565 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 USP45Q70EL2 814 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 JAMLQ86YT9 394 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 SNIP1Q8TAD8 396 aaKnown RBP17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 OR1E3Q8WZA6 343 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 SPOCK2Q92563 424 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 QKIQ96PU8 341 aaKnown RBP eCLIP17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 POLR1EQ9GZS1 481 aaKnown RBP17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 POLR1BQ9H9Y6 1135 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 HAUS2Q9NVX0 235 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 HEY1Q9Y5J3 304 aa17.98■□□□□ 0.47
SQSTM1-204ENST00000453046 UQCRHLA0A096LP55 91 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GOLGA6CA6NDK9 693 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GOLGA6BA6NDN3 693 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 HEXIM1O94992 359 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 PGLSO95336 258 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 UQCRHP07919 91 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 HOXC4P09017 264 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GOLGA6DP0CG33 693 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 RBP3P10745 1247 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 MX2P20592 715 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GARSP41250 739 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 PTGIRP43119 386 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 LSSP48449 732 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 PDK1Q15118 436 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 ERCC6LQ2NKX8 1250 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 C3orf38Q5JPI3 329 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 TAF8Q7Z7C8 310 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 KYQ8NBH2 561 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GRAMD1AQ96CP6 724 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 COQ10AQ96MF6 247 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 ZNF578Q96N58 590 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 RBM15Q96T37 977 aaKnown RBP eCLIP17.97■□□□□ 0.471e-7■■□□□ 13.5
SQSTM1-204ENST00000453046 SEMA3CQ99985 751 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 FAM118BQ9BPY3 351 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 LRRC1Q9BTT6 524 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 BRD8Q9H0E9 1235 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 RAB17Q9H0T7 212 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 CYP4F12Q9HCS2 524 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 FGF22Q9HCT0 170 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 MRPL40Q9NQ50 206 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 GOLGA6AQ9NYA3 693 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 SAE1Q9UBE0 346 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 TTLL3Q9Y4R7 772 aa17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 V9GYY5 206 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-204ENST00000453046 TNFRSF10CO14798 259 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 TTI1O43156 1089 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 MAP3K6O95382 1288 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 TUBBP07437 444 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 RHOXF2BP0C7M4 288 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 CTPS1P17812 591 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 GM2AP17900 193 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 ETV3P41162 512 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 EPHB1P54762 984 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 GALNT2Q10471 571 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 KCTD16Q68DU8 428 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 FOXR1Q6PIV2 292 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 TEX26Q8N6G2 289 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 FAM46DQ8NEK8 389 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 OR6C4Q8NGE1 309 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 CCHCR1Q8TD31 782 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 SCRN2Q96FV2 425 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 ATXN7L3BQ96GX2 97 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 CRELD1Q96HD1 420 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 LGMNQ99538 433 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 RHOXF2Q9BQY4 288 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 LGR4Q9BXB1 951 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 PHPT1Q9NRX4 125 aaPredicted RBP17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 SATB2Q9UPW6 733 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 ZNF148Q9UQR1 794 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 RAI2Q9Y5P3 530 aa17.96■□□□□ 0.47
SQSTM1-204ENST00000453046 SHROOM3Q8TF72 1996 aa17.95■□□□□ 0.46
SQSTM1-204ENST00000453046 NPIPB15A6NHN6 443 aaPredicted RBP17.95■□□□□ 0.46
SQSTM1-204ENST00000453046 H7C0C1 242 aa17.95■□□□□ 0.46
SQSTM1-204ENST00000453046 PSMD11O00231 422 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms