RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IP6K2Q9UHH9 426 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TUBD1Q9UJT1 453 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 B3GALT1Q9Y5Z6 326 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 BZW2Q9Y6E2 419 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 DDX3XO00571 662 aaKnown RBP eCLIP13.21□□□□□ -0.29
HMGB3-204ENST00000448905 RAD1O60671 282 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 THRAP10827 490 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 WT1P19544 449 aaPredicted RBP13.21□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF165P49910 485 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 NFKB2Q00653 900 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 MC1RQ01726 317 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 CLCA4Q14CN2 919 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 NCAPHQ15003 741 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 LRRC66Q68CR7 880 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 CEACAM20Q6UY09 585 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 KDELC2Q7Z4H8 507 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 SLC9B2Q86UD5 537 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 TSPAN33Q86UF1 283 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 MAP7D3Q8IWC1 876 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 NLGN4XQ8N0W4 816 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 SFRP1Q8N474 314 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 TEX26Q8N6G2 289 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 AOPEPQ8N6M6 819 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 NLGN4YQ8NFZ3 816 aaPredicted RBP13.21□□□□□ -0.29
HMGB3-204ENST00000448905 CCHCR1Q8TD31 782 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 NCSTNQ92542 709 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 SCAMP4Q969E2 229 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 RMI1Q9H9A7 625 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 GPN2Q9H9Y4 310 aaPredicted RBP13.21□□□□□ -0.29
HMGB3-204ENST00000448905 FBXO8Q9NRD0 319 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 ETNK2Q9NVF9 386 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 RCOR3Q9P2K3 495 aaPredicted RBP13.21□□□□□ -0.29
HMGB3-204ENST00000448905 AMACRQ9UHK6 382 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 CD84Q9UIB8 345 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 DOCK4Q8N1I0 1966 aa13.21□□□□□ -0.29
HMGB3-204ENST00000448905 A0A0J9YYE9 177 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 RGSL1A5PLK6 1076 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 OR5K4A6NMS3 321 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 A8MU76 341 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 MYO1FO00160 1098 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 MATN3O15232 486 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 TRBC1P01850 177 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 PDHA1P08559 390 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 LIFP15018 202 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 IL1R2P27930 398 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 POLE2P56282 527 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 RPL26P61254 145 aaKnown RBP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 MC2RQ01718 297 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 HHEXQ03014 270 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 KCNAB2Q13303 367 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 ANKRD20A8PQ5CZ79 823 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 SNAP47Q5SQN1 464 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 CCDC183Q5T5S1 534 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 CHST15Q7LFX5 561 aaPredicted RBP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 HTR3CQ8WXA8 447 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 SLC45A3Q96JT2 553 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 FUCA2Q9BTY2 467 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 RIOK2Q9BVS4 552 aaKnown RBP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 EPB41L1Q9H4G0 881 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 FAM83DQ9H4H8 585 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 PCDH18Q9HCL0 1135 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 SARS2Q9NP81 518 aaKnown RBP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 RBM22Q9NW64 420 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 OCIAD1Q9NX40 245 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 VPS18Q9P253 973 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 RPL26L1Q9UNX3 145 aaKnown RBP13.2□□□□□ -0.3
HMGB3-204ENST00000448905 PLEKHM1Q9Y4G2 1056 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 ST14Q9Y5Y6 855 aa13.2□□□□□ -0.3
HMGB3-204ENST00000448905 INPP4BO15327 924 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 FZD6O60353 706 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 MAP3K6O95382 1288 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 MBD3O95983 291 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 SERPINC1P01008 464 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 SKILP12757 684 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 CCNCP24863 283 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 TLE1Q04724 770 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 SEPT6Q14141 434 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 IFI16Q16666 785 aaKnown RBP13.19□□□□□ -0.3
HMGB3-204ENST00000448905 ANKS6Q68DC2 871 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 IYDQ6PHW0 289 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 LYSMD3Q7Z3D4 306 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 PLXDC1Q8IUK5 500 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 KCTD6Q8NC69 237 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 ZNF564Q8TBZ8 553 aaPredicted RBP13.19□□□□□ -0.3
HMGB3-204ENST00000448905 SLC37A2Q8TED4 501 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 PTCD2Q8WV60 388 aaKnown RBP13.19□□□□□ -0.3
HMGB3-204ENST00000448905 BPIFA3Q9BQP9 254 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 HERPUD2Q9BSE4 406 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 ADGRE3Q9BY15 652 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 HSD3B7Q9H2F3 369 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 ANAPC2Q9UJX6 822 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 PILRAQ9UKJ1 303 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 CHKBQ9Y259 395 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 TTLL3Q9Y4R7 772 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 COL6A6A6NMZ7 2263 aa13.19□□□□□ -0.3
HMGB3-204ENST00000448905 KIR2DS5A0A0G2JLQ3 304 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 A0A0G2JNG1 304 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 KIR2DS3K7RE56 304 aa13.18□□□□□ -0.3
HMGB3-204ENST00000448905 POLR1CO15160 346 aaPredicted RBP13.18□□□□□ -0.3
HMGB3-204ENST00000448905 SNX2O60749 519 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms