RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GM2AP17900 193 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 IL4RP24394 825 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 HNRNPH3P31942 346 aaKnown RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 CSTF2P33240 577 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS41-208ENST00000448833 ACTR1BP42025 376 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ARHGAP25P42331 645 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 TNNT3P45378 269 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 FASLGP48023 281 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ATP1A2P50993 1020 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 LIMK2P53671 638 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 RAB15P59190 212 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ACTR1AP61163 376 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 MAXP61244 160 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 B4GALNT1Q00973 533 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CTBSQ01459 385 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 SLC25A11Q02978 314 aaKnown RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 PTSQ03393 145 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 TRAF2Q12933 501 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 DPYSL3Q14195 570 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 TCEA2Q15560 299 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 LRRC66Q68CR7 880 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CCDC70Q6NSX1 233 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 SLC30A9Q6PML9 568 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 B3GNT8Q7Z7M8 397 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 SLITRK4Q8IW52 837 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ZNF454Q8N9F8 522 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CCNYQ8ND76 341 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 OR10G6Q8NH81 332 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ZNF564Q8TBZ8 553 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 TTC9Q92623 222 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 HDAC11Q96DB2 347 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 TEFMQ96QE5 360 aaKnown RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 OR2M4Q96R27 311 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 LYSMD1Q96S90 227 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 SLC38A3Q99624 504 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ZPBPQ9BS86 351 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 EFHD1Q9BUP0 239 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 MLPHQ9BV36 600 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 DDA1Q9BW61 102 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 BRD8Q9H0E9 1235 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ABCG8Q9H221 673 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 FAM83DQ9H4H8 585 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CBX8Q9HC52 389 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 PCDH9Q9HC56 1237 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ETNK2Q9NVF9 386 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 KCNK4Q9NYG8 393 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 PKD2L2Q9NZM6 624 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CTTNBP2NLQ9P2B4 639 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ZNHIT2Q9UHR6 403 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 PCDHGA3Q9Y5H0 932 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 C1orf232A0A0U1RR37 186 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TTC24A2A3L6 582 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 J3QKU1 62 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PPP1R12AO14974 1030 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 DUX1O43812 170 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 C1QL1O75973 258 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 ASMTLO95671 621 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PRB1P04280 392 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PDHA1P08559 390 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PLA2G2AP14555 144 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 CTPS1P17812 591 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 LHCGRP22888 699 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 CD1CP29017 333 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PBX1P40424 430 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PPM1FP49593 454 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 ARSEP51690 589 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 STC1P52823 247 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 MAPK10P53779 464 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 OR1D5P58170 312 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PDK1Q15118 436 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 SLC18A3Q16572 532 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 SKOR2Q2VWA4 1001 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 AMZ1Q400G9 498 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PYCR3Q53H96 274 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 DCAF12Q5T6F0 453 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 E4F1Q66K89 784 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 NCBP2-AS2Q69YL0 99 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 PDPK2PQ6A1A2 396 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TMEM71Q6P5X7 295 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 CYB5D1Q6P9G0 228 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 WDR74Q6RFH5 385 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 SLC9B2Q86UD5 537 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 LUZP1Q86V48 1076 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 NRROSQ86YC3 692 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TP53INP2Q8IXH6 220 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 RHOT2Q8IXI1 618 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 CCDC13Q8IYE1 715 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 OR8K1Q8NGG5 319 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 CCL4L1Q8NHW4 92 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 USP7Q93009 1102 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 COX14Q96I36 57 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 HERPUD2Q9BSE4 406 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 FUCA2Q9BTY2 467 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TDRD1Q9BXT4 1180 aaKnown RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 FAM117AQ9C073 453 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 ZMYND15Q9H091 742 aa7.03□□□□□ -1.28
VPS41-208ENST00000448833 TRIT1Q9H3H1 467 aaKnown RBP7.03□□□□□ -1.28
VPS41-208ENST00000448833 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS41-208ENST00000448833 CHKBQ9Y259 395 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms