RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CCDC162PA2VCL2 907 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF487B1APH4 448 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TGM5O43548 720 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SGTAO43765 313 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF682O95780 498 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 EIF2S1P05198 315 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 OGNP20774 298 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PTGER3P43115 390 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PRKCQQ04759 706 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF33AQ06730 810 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 GRM2Q14416 872 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZBTB6Q15916 424 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ARHGAP36Q6ZRI8 547 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 MMAAQ8IVH4 418 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 BBS7Q8IWZ6 715 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CFAP206Q8IYR0 622 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CLYBLQ8N0X4 340 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SPATS2LQ9NUQ6 558 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 COPG2Q9UBF2 871 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 RAB23Q9ULC3 237 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 WNK3Q9BYP7 1800 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ATP6AP2A0A1C7CYW4 349 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 GSAPA4D1B5 854 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ATP6AP2O75787 350 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 IPO13O94829 963 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 RB1P06400 928 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ALPIP09923 528 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 COX7A2P14406 83 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SERINC3Q13530 473 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 KCNJ11Q14654 390 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CYTH1Q15438 398 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TDRPQ86YL5 185 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF655Q8N720 491 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 OR10G6Q8NH81 332 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 IRF7Q92985 503 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CLP1Q92989 425 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 MAGEB10Q96LZ2 347 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PPP3R2Q96LZ3 170 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 BTBD10Q9BSF8 475 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 C12orf65Q9H3J6 166 aaKnown RBP7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SAR1AQ9NR31 198 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 AGRPO00253 132 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PRAMEF11O60813 436 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 GUCY1B2O75343 617 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ESR1P03372 595 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CA3P07451 260 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 IDSP22304 550 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 HNF4AP41235 474 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SLC1A2P43004 574 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 NEK3P51956 506 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 USP4Q13107 963 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 PRMT9Q6P2P2 845 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 FAM171BQ6P995 826 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 CYB5D1Q6P9G0 228 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF621Q6ZSS3 439 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 GALNT13Q8IUC8 556 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SPOCK2Q92563 424 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 TRMOQ9BU70 441 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 ADNPQ9H2P0 1102 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 NKX2-4Q9H2Z4 354 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 SFXN1Q9H9B4 322 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 LGALS13Q9UHV8 139 aa7.38□□□□□ -1.23
SYNE1-213ENST00000448038 EIF4E1BA6NMX2 242 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 HGFP14210 728 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 USP46P62068 366 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 MED21Q13503 144 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PRR23CQ6ZRP0 262 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RPAINQ86UA6 219 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RNF148Q8N7C7 305 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 KLK6Q92876 244 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CCDC134Q9H6E4 229 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PNPOQ9NVS9 261 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 KIAA1551Q9HCM1 1747 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 OR51F1A6NGY5 319 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 SLC28A1O00337 649 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 BMP10O95393 424 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 IFNA14P01570 189 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 LINC00032P0C843 101 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ITPKAP23677 461 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 EPHA3P29320 983 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 NSG1P42857 185 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CCNHP51946 323 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TAS2R39P59534 338 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RPL38P63173 70 aaKnown RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PEX6Q13608 980 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 MYLK3Q32MK0 819 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM220Q6QAJ8 160 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 OSBPL1AQ9BXW6 950 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 RHBGQ9H310 441 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CAAP1Q9H8G2 361 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 CDK5RAP2Q96SN8 1893 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 COL4A1P02462 1669 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 TM7SF2O76062 418 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 FSBPO95073 299 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 VAV1P15498 845 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 DRD4P21917 467 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PPP2R1BP30154 601 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 DSG1Q02413 1049 aa7.37□□□□□ -1.23
SYNE1-213ENST00000448038 PLOD1Q02809 727 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF460Q14592 562 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms