RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RFTN1Q14699 578 aaPredicted RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 SIRPB2Q5JXA9 342 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 UBXN11Q5T124 520 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TMTC4Q5T4D3 741 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 GLYATQ6IB77 296 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ERMP1Q7Z2K6 904 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TMEM102Q8N9M5 508 aaPredicted RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 FBXL8Q96CD0 374 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TMLHEQ9NVH6 421 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 RNF11Q9Y3C5 154 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 DGKBQ9Y6T7 804 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 IDO1P14902 403 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 HERVK_113P63132 956 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 BNIP2Q12982 314 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TRIM16LQ309B1 348 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 CTXN3Q4LDR2 81 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 UNC50Q53HI1 259 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ZNF678Q5SXM1 525 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TAF2Q6P1X5 1199 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 SPESP1Q6UW49 350 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ANGPTL8Q6UXH0 198 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 CILP2Q8IUL8 1156 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 FIBCD1Q8N539 461 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 FAM110BQ8TC76 370 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ZC3H15Q8WU90 426 aaKnown RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 PTCD2Q8WV60 388 aaKnown RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 ERVK-6Q9BXR3 956 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 OSBPL6Q9BZF3 934 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 TMEM165Q9HC07 324 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 CROCCQ5TZA2 2017 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 PRRC2BQ5JSZ5 2229 aaKnown RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 C16orf96A6NNT2 1141 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 F5H5T6 163 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 OR4F21O95013 312 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 GSSP48637 474 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 POLD2P49005 469 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 GSK3BP49841 420 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 PFKPQ01813 784 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 SCAPQ12770 1279 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 FAM98BQ52LJ0 330 aaKnown RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 ALFQ53S48 1182 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 PERM1Q5SV97 790 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ZDHHC13Q8IUH4 622 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 SLC15A3Q8IY34 581 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 C2orf69Q8N8R5 385 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 OR56A4Q8NGH8 313 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 CHID1Q9BWS9 393 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 ABCG8Q9H221 673 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 SMPD3Q9NY59 655 aaPredicted RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 GALPQ9UBC7 116 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 LEF1Q9UJU2 399 aaPredicted RBP11.83□□□□□ -0.52
MSH6-204ENST00000445503 MCM3APO60318 1980 aa11.83□□□□□ -0.52
MSH6-204ENST00000445503 CDC7O00311 574 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 NME4O00746 187 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 CDK14O94921 469 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ZNF26P17031 533 aaPredicted RBP11.82□□□□□ -0.52
MSH6-204ENST00000445503 CDK9P50750 372 aaKnown RBP11.82□□□□□ -0.52
MSH6-204ENST00000445503 UFM1P61960 85 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 VAC14Q08AM6 782 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 LRP8Q14114 963 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 EIF2B4Q9UI10 523 aaKnown RBP11.82□□□□□ -0.52
MSH6-204ENST00000445503 PAIP2BQ9ULR5 123 aaKnown RBP11.82□□□□□ -0.52
MSH6-204ENST00000445503 DNAJC15Q9Y5T4 150 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 A0A0J9YVX5 310 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 M0R3G1 203 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ACVRL1P37023 503 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 MAGEA12P43365 314 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 AGTR2P50052 363 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 INHBEP58166 350 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 IL5RAQ01344 420 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 PCBP1Q15365 356 aaKnown RBP eCLIP11.82□□□□□ -0.52
MSH6-204ENST00000445503 C16orf59Q7L2K0 433 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 LINC01465Q8N7H1 131 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 CLHC1Q8NHS4 586 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 SEPT8Q92599 483 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 LINGO1Q96FE5 620 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 FANCEQ9HB96 536 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 KCNH4Q9UQ05 1017 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 SQORQ9Y6N5 450 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 SLC7A4O43246 635 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 CAPN3P20807 821 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 KCNC1P48547 511 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 DNAJB13P59910 316 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 DGCR6Q14129 220 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 MAPK11Q15759 364 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 GPRIN3Q6ZVF9 776 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 OR7D4Q8NG98 312 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ROPN1LQ96C74 230 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 NMUR1Q9HB89 426 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 SCUBE2Q9NQ36 999 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ZNHIT2Q9UHR6 403 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 CEPT1Q9Y6K0 416 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 BBIP1A8MTZ0 92 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 F8W810 466 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 GJB3O75712 270 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 SNAP29O95721 258 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ZNF682O95780 498 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 MYCP01106 439 aaPredicted RBP11.82□□□□□ -0.52
MSH6-204ENST00000445503 CYBBP04839 570 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 POLR2JP52435 117 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms