RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 VAPBO95292 243 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 PCCBP05166 539 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 GSTA2P09210 222 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 TSHRP16473 764 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 TEAD1P28347 426 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 MC4RP32245 332 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 PTGER3P43115 390 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 ITGA9Q13797 1035 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 STAT4Q14765 748 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 NAA30Q147X3 362 aaPredicted RBP15.7■□□□□ 0.1
USP40-206ENST00000443711 CRYMQ14894 314 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 CHRNA6Q15825 494 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 LONRF1Q17RB8 773 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 STEAP4Q687X5 459 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 PDPK2PQ6A1A2 396 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 RAET1GQ6H3X3 334 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 AFTPHQ6ULP2 937 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 UNC5AQ6ZN44 842 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 PRR23BQ6ZRT6 265 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 RELL1Q8IUW5 271 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP40-206ENST00000443711 PRSS33Q8NF86 280 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 FAM174AQ8TBP5 190 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 ZNF398Q8TD17 642 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 C9orf72Q96LT7 481 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 MYOCQ99972 504 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 ORAI3Q9BRQ5 295 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 WDR83Q9BRX9 315 aaKnown RBP15.7■□□□□ 0.1
USP40-206ENST00000443711 TRIM56Q9BRZ2 755 aaKnown RBP15.7■□□□□ 0.1
USP40-206ENST00000443711 MIR1-1HGQ9H1L0 117 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 SUDS3Q9H7L9 328 aaPredicted RBP15.7■□□□□ 0.1
USP40-206ENST00000443711 FZD3Q9NPG1 666 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 TNRC6BQ9UPQ9 1833 aaKnown RBP15.69■□□□□ 0.1
USP40-206ENST00000443711 ZCWPW2A0A1B0GU75 182 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 GAPDHSO14556 408 aaPredicted RBP15.69■□□□□ 0.1
USP40-206ENST00000443711 TOR1BO14657 336 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 SRP72O76094 671 aaKnown RBP15.69■□□□□ 0.1
USP40-206ENST00000443711 FAM153BP0C7A2 387 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 MYBL2P10244 700 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 ITGALP20701 1170 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 MAOBP27338 520 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 IGFALSP35858 605 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 DPP6P42658 865 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 CACNG1Q06432 222 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 TCF15Q12870 199 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 PEX6Q13608 980 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 INPP5AQ14642 412 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 FAM153CQ494X1 144 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 GPR33Q49SQ1 333 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 ZRANB3Q5FWF4 1079 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 ADAMTSL4Q6UY14 1074 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 SNX20Q7Z614 316 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 PLA2G15Q8NCC3 412 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 OR4L1Q8NH43 312 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 SGSM3Q96HU1 749 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 AGAP2Q99490 1192 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 ASB8Q9H765 288 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 AASDHPPTQ9NRN7 309 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 RAB21Q9UL25 225 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 RAB23Q9ULC3 237 aa15.69■□□□□ 0.1
USP40-206ENST00000443711 CACNA1HO95180 2353 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 K7ESM1 405 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A9O60656 530 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 SPAG6O75602 509 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 PRAMEF1O95521 474 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 GOT2P00505 430 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A6P19224 532 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A1P22309 533 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A4P22310 534 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 ITPKAP23677 461 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A3P35503 534 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A5P35504 534 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 TRIM23P36406 574 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 ARCN1P48444 511 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 CLDN2P57739 230 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 RACK1P63244 317 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 NFATC2Q13469 925 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 THOC5Q13769 683 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 FRG1Q14331 258 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 KYNUQ16719 465 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 ATP13A5Q4VNC0 1218 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 FASTKD1Q53R41 847 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 GCNT7Q6ZNI0 430 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 GSPT2Q8IYD1 628 aaKnown RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 PELI3Q8N2H9 469 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 TMEM145Q8NBT3 493 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 MYRIPQ8NFW9 859 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 C1orf216Q8TAB5 229 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 GSDMBQ8TAX9 411 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.68■□□□□ 0.1
USP40-206ENST00000443711 LOXL4Q96JB6 756 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 BMFQ96LC9 184 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 TTC25Q96NG3 672 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 VPS35Q96QK1 796 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 APOOQ9BUR5 198 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A7Q9HAW7 530 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A10Q9HAW8 530 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 UGT1A8Q9HAW9 530 aa15.68■□□□□ 0.1
USP40-206ENST00000443711 C20orf96Q9NUD7 363 aaPredicted RBP15.68■□□□□ 0.1
USP40-206ENST00000443711 CA5BQ9Y2D0 317 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms