RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RTL4Q6ZR62 310 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 GALNT13Q8IUC8 556 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 SLC43A3Q8NBI5 491 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 RP9Q8TA86 221 aaKnown RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 ZCCHC10Q8TBK6 192 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 PTPN18Q99952 460 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 MAP4K5Q9Y4K4 846 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 PCDHGA3Q9Y5H0 932 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 RAI2Q9Y5P3 530 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 G3V2T6 193 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CDH3P22223 829 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 IDSP22304 550 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 SMU1Q2TAY7 513 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 TIGD2Q4W5G0 525 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 BEND7Q8N7W2 519 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 PPTC7Q8NI37 304 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 PTCD2Q8WV60 388 aaKnown RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 TSEN15Q8WW01 171 aaKnown RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 GAL3ST4Q96RP7 486 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 ATG10Q9H0Y0 220 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CDH19Q9H159 772 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 ADGRE2Q9UHX3 823 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CDK14O94921 469 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 MSX2P35548 267 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 MEA1Q16626 185 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 FBXO48Q5FWF7 155 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 GALNT18Q6P9A2 607 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 GK5Q6ZS86 529 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 SLC34A3Q8N130 599 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 MKL1Q969V6 931 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 DPEP2Q9H4A9 486 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 DUS2Q9NX74 493 aaKnown RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 RHPN2P1A8MT19 583 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 FSBPO95073 299 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 PGM3O95394 542 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 C22orf31O95567 290 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 SELPP16109 830 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 ARFIP1P53367 373 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 TUSC3Q13454 348 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 ATG14Q6ZNE5 492 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 LDB1Q86U70 411 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CIR1Q86X95 450 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CFAP206Q8IYR0 622 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 CERS5Q8N5B7 392 aa15.35■□□□□ 0.05
PTPRF-206ENST00000429895 BTN3A3O00478 584 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 HAT1O14929 419 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 KRT36O76013 467 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ARHGDIBP52566 201 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PDK3Q15120 406 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ZBTB6Q15916 424 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 NDUFA9Q16795 377 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 SLC25A52Q3SY17 297 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 BRMS1LQ5PSV4 323 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 CUZD1Q86UP6 607 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 KAT2AQ92830 837 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ZFP37Q9Y6Q3 630 aaPredicted RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ITSN1Q15811 1721 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 EPHB6O15197 1021 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 RPP40O75818 363 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 KCNA5P22460 613 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 GABRB2P47870 512 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PUDPQ08623 228 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 BNIP2Q12982 314 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 KCNA10Q16322 511 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PIK3R6Q5UE93 754 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PIWIL4Q7Z3Z4 852 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 AMER2Q8N7J2 671 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 FBXW2Q9UKT8 454 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 NCANO14594 1321 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 DHRS12A0PJE2 317 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 HDAC3O15379 428 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 CLDN11O75508 207 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 DBIP07108 87 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 CYP4F8P98187 520 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 FOXM1Q08050 763 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 C2orf80Q0P641 193 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ATAT1Q5SQI0 421 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 RNASEH2BQ5TBB1 312 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 GPR107Q5VW38 600 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 CXorf57Q6NSI4 855 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 GALNTL5Q7Z4T8 443 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 RDH11Q8TC12 318 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 FUCA2Q9BTY2 467 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 GLOD4Q9HC38 313 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PCYOX1Q9UHG3 505 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 NAA20P61599 178 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 MADCAM1Q13477 382 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 HECTD2Q5U5R9 776 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 DHDDSQ86SQ9 333 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ARNTL2Q8WYA1 636 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ART4Q93070 314 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 SLC4A9Q96Q91 983 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 PCDH18Q9HCL0 1135 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 SEC14L3Q9UDX4 400 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 TMA7Q9Y2S6 64 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 COLEC10Q9Y6Z7 277 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 A0A1W2PPM1 405 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 ENPP3O14638 875 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 SIN3BO75182 1162 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 GRM3Q14832 879 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms