RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LHCGRP22888 699 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 KELP23276 732 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 SSTR1P30872 391 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 AKT1P31749 480 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 TAS2R38P59533 333 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 FRG1Q14331 258 aaKnown RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 NAA30Q147X3 362 aaPredicted RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 FAM153CQ494X1 144 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 LDLRAP1Q5SW96 308 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 NEPROQ6NW34 567 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 CES3Q6UWW8 571 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 CYS1Q717R9 158 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 PTAR1Q7Z6K3 402 aaPredicted RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 PHYKPLQ8IUZ5 450 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 GOLGA6L1Q8N7Z2 621 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 SGSM3Q96HU1 749 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 TBATAQ96M53 351 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 TCF12Q99081 682 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 TSSK1BQ9BXA7 367 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 COL25A1Q9BXS0 654 aaPredicted RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 LRRC4CQ9HCJ2 640 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 PHPT1Q9NRX4 125 aaPredicted RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 TREX1Q9NSU2 369 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 ZSCAN32Q9NX65 697 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 NINJ2Q9NZG7 142 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 NFKBIL1Q9UBC1 381 aaPredicted RBP10.06□□□□□ -0.8
CD44-207ENST00000425428 CD84Q9UIB8 345 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 GGT7Q9UJ14 662 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 COQ6Q9Y2Z9 468 aa10.06□□□□□ -0.8
CD44-207ENST00000425428 QSOX1O00391 747 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 SLC25A14O95258 325 aaPredicted RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 GOT2P00505 430 aaKnown RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 PCCBP05166 539 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 ZNF7P17097 686 aaPredicted RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 MSH3P20585 1137 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 MSH2P43246 934 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 THOP1P52888 689 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 EIF3BP55884 814 aaKnown RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 DPTQ07507 201 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 PTK2BQ14289 1009 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 FASTKD3Q14CZ7 662 aaKnown RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 AGERQ15109 404 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 ANGPT1Q15389 498 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 HSP90AA5PQ58FG0 334 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 STEAP4Q687X5 459 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 SEL1L3Q68CR1 1132 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 TSSK4Q6SA08 328 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 KIAA0408Q6ZU52 694 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 HDXQ7Z353 690 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 LRRC6Q86X45 466 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 FBF1Q8TES7 1133 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 GAB3Q8WWW8 586 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 COQ10AQ96MF6 247 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 LENG8Q96PV6 779 aaPredicted RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 RIOK2Q9BVS4 552 aaKnown RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 C1QTNF2Q9BXJ5 285 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 ABCG8Q9H221 673 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 SEMA4AQ9H3S1 761 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 AASDHPPTQ9NRN7 309 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 IARS2Q9NSE4 1012 aaKnown RBP10.05□□□□□ -0.8
CD44-207ENST00000425428 C2orf42Q9NWW7 574 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 KCTD3Q9Y597 815 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 TTC28Q96AY4 2481 aa10.05□□□□□ -0.8
CD44-207ENST00000425428 SCN8AQ9UQD0 1980 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SPAG17Q6Q759 2223 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 ZNF106Q9H2Y7 1883 aaKnown RBP10.04□□□□□ -0.8
CD44-207ENST00000425428 TCRBV9S1A1TA0A576 114 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 CCDC162PA2VCL2 907 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 FAM86C2PA6NEL3 165 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 PRR5-ARHGAP8B1AHC4 643 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 RIPK2O43353 540 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 ASMTLO95671 621 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 MYBL2P10244 700 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 OGNP20774 298 aaKnown RBP10.04□□□□□ -0.8
CD44-207ENST00000425428 SLC12A2P55011 1212 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 CREB5Q02930 508 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 ACVR1Q04771 509 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 MSLNQ13421 630 aaPredicted RBP10.04□□□□□ -0.8
CD44-207ENST00000425428 NFATC2Q13469 925 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SLC29A2Q14542 456 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 TEAD4Q15561 434 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 UAP1Q16222 522 aaPredicted RBP10.04□□□□□ -0.8
CD44-207ENST00000425428 CDKN3Q16667 212 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 ZNF470Q6ECI4 717 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 TECPR1Q7Z6L1 1165 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 RABEPKQ7Z6M1 372 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SLC26A11Q86WA9 606 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 MREGQ8N565 214 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 GPR26Q8NDV2 337 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 OR13J1Q8NGT2 312 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 KLK6Q92876 244 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SERAC1Q96JX3 654 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SMIM14Q96QK8 99 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 COPS8Q99627 209 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 WDR26Q9H7D7 661 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 IL26Q9NPH9 171 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 INTS10Q9NVR2 710 aaKnown RBP10.04□□□□□ -0.8
CD44-207ENST00000425428 SLC2A6Q9UGQ3 507 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 SUSD2Q9UGT4 822 aa10.04□□□□□ -0.8
CD44-207ENST00000425428 INVSQ9Y283 1065 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms