RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DNAJA2O60884 412 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PAMP19021 973 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 GARSP41250 739 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 MATKP42679 507 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 EFEMP1Q12805 493 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SELENBP1Q13228 472 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 MAMLD1Q13495 774 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SOWAHAQ2M3V2 549 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 KYAT3Q6YP21 454 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 TMEM26Q6ZUK4 368 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 DEFB106AQ8N104 65 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP54-205ENST00000424265 TNFRSF10DQ9UBN6 386 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PFDN2Q9UHV9 154 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TMEM59LQ9UK28 342 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PRR23AA6NEV1 266 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PIK3R2O00459 728 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ACRP10323 421 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SSTP61278 116 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 UPP1Q16831 310 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SYCE2Q6PIF2 218 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SLC13A5Q86YT5 568 aaPredicted RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 GALNT11Q8NCW6 608 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 GPR88Q9GZN0 384 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TOR3AQ9H497 397 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PCDHA3Q9Y5H8 950 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 CDY1Q9Y6F8 540 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 KCNE2Q9Y6J6 123 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 F8VP50 259 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TTC4O95801 387 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 MT-ND3P03897 115 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 POLR2GP62487 172 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP54-205ENST00000424265 SLC25A3Q00325 362 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 OXA1LQ15070 435 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 DGUOKQ16854 277 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PAOXQ6QHF9 649 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 UNC5DQ6UXZ4 953 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ADAMTSL2Q86TH1 951 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TMEM192Q8IY95 271 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 GAS2L1Q99501 681 aaPredicted RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 LMAN2LQ9H0V9 348 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 NARFLQ9H6Q4 476 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 RCOR3Q9P2K3 495 aaPredicted RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 NOCTQ9UK39 431 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 BACE2Q9Y5Z0 518 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 MAU2Q9Y6X3 613 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TRAV6A0A075B6T7 132 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 BTN3A3O00478 584 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 MSI1O43347 362 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 MYL4P12829 197 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 DDX6P26196 483 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP54-205ENST00000424265 IL12AP29459 219 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 HPCAL1P37235 193 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 POU6F1Q14863 301 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 RUNDC3AQ59EK9 446 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 RBM20Q5T481 1227 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 SHEQ5VZ18 495 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ZSWIM2Q8NEG5 633 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ZNF285Q96NJ3 590 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SLC6A15Q9H2J7 730 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 SIX4Q9UIU6 781 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 UGT2A1Q9Y4X1 527 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PLXNB2O15031 1838 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 FOXO6A8MYZ6 492 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PLK4O00444 970 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 BUD23O43709 281 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 RFPL2O75678 378 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 YES1P07947 543 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 CSF2RAP15509 400 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 RPA3P35244 121 aaPredicted RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 CAPZA2P47755 286 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 RAB14P61106 215 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ILF2Q12905 390 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 ALG1LQ6GMV1 187 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ERAP2Q6P179 960 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 FAM183BPQ6ZVS7 135 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 DEFB107AQ8IZN7 70 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 ZNF366Q8N895 744 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TMEM40Q8WWA1 233 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 OVCA2Q8WZ82 227 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 FAF2Q96CS3 445 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 CMTM5Q96DZ9 223 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 IGSF21Q96ID5 467 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 PACSIN1Q9BY11 444 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 LIN7BQ9HAP6 207 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 MARCH2Q9P0N8 246 aa9.79□□□□□ -0.84
USP54-205ENST00000424265 TRMT6Q9UJA5 497 aaKnown RBP9.79□□□□□ -0.84
USP54-205ENST00000424265 HACD1B0YJ81 288 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 PRKD3O94806 890 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 CYP11A1P05108 521 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 SLC11A1P49279 550 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 TAF5Q15542 800 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 TEDDM1Q5T9Z0 273 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 RYBPQ8N488 228 aaPredicted RBP9.78□□□□□ -0.84
USP54-205ENST00000424265 CYGBQ8WWM9 190 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 PGLYRP2Q96PD5 576 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 REXO4Q9GZR2 422 aaKnown RBP9.78□□□□□ -0.84
USP54-205ENST00000424265 ATXN3LQ9H3M9 355 aa9.78□□□□□ -0.84
USP54-205ENST00000424265 PAQR5Q9NXK6 330 aaPredicted RBP9.78□□□□□ -0.84
USP54-205ENST00000424265 SNX5Q9Y5X3 404 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms