RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TCRBV21S2A2A0A5A6 115 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 KANSL1LA0AUZ9 987 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 POLR3GO15318 223 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 AHSGP02765 367 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 BRAFP15056 766 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 ABCG1P45844 678 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LEPRP48357 1165 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LIG3P49916 1009 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 PPP2R2AP63151 447 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 ZBTB16Q05516 673 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 PEX6Q13608 980 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 SEPT7Q16181 437 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 GPR33Q49SQ1 333 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 TNFAIP8L3Q5GJ75 292 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LIPIQ6XZB0 460 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 HSD11B1LQ7Z5J1 315 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LDB1Q86U70 411 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 EXOC3L1Q86VI1 746 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 ZC3HC1Q86WB0 502 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 DCLK2Q8N568 766 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 ALKBH8Q96BT7 664 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 ULK4Q96C45 1275 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 SPATA16Q9BXB7 569 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 C1QTNF1Q9BXJ1 281 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 IQCGQ9H095 443 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM83DQ9H4H8 585 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM96AQ9H5X1 160 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LMAN1LQ9HAT1 526 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 LTB4R2Q9NPC1 389 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 FBXL12Q9NXK8 326 aa17.05■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM95CA0A1B0GW59 222 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 WNT9AO14904 365 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 AREL1O15033 823 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TSPAN6O43657 245 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 AP1G1O43747 822 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PCDH8O95206 1070 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 F7P08709 466 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 KRT4P19013 534 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 SAT1P21673 171 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TARSP26639 723 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TYK2P29597 1187 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 POLD2P49005 469 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 STARD6P59095 220 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 DCDC1P59894 354 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 XIAPP98170 497 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 NFATC2Q13469 925 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 USP10Q14694 798 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CHRNA6Q15825 494 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TYSND1Q2T9J0 566 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TMEM52BQ4KMG9 183 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TAF1BQ53T94 588 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PIP5KL1Q5T9C9 394 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PSAPL1Q6NUJ1 521 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 RAPH1Q70E73 1250 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 KBTBD6Q86V97 674 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 RAVER1Q8IY67 606 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 NRSN1Q8IZ57 195 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 C4orf33Q8N1A6 199 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PGBD3Q8N328 593 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 AADATQ8N5Z0 425 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 GPR26Q8NDV2 337 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 FLCNQ8NFG4 579 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 ZNF398Q8TD17 642 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TSPAN17Q96FV3 270 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TSNARE1Q96NA8 513 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 GPR22Q99680 433 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 MKRN2Q9H000 416 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CNOT10Q9H9A5 744 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 IL26Q9NPH9 171 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CD84Q9UIB8 345 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 SLC39A10Q9ULF5 831 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 SMG5Q9UPR3 1016 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 FADS3Q9Y5Q0 445 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PLXNA2O75051 1894 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 A0A1W2PPM1 405 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 KRBA1A5PL33 1030 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 SHISA7A6NL88 538 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 FAM170BA6NMN3 283 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 GOLGA8RI6L899 631 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TPP1O14773 563 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 HAUS5O94927 633 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CHRNB1P11230 501 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 C6P13671 934 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 DRD3P35462 400 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 ETV3P41162 512 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 DGKEP52429 567 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 SEMA3AQ14563 771 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CRY1Q16526 586 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 AGBL4Q5VU57 503 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 TIFABQ6ZNK6 161 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 Q6ZS52 159 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 ACMSDQ8TDX5 336 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 MZB1Q8WU39 189 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 NUS1Q96E22 293 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 CABS1Q96KC9 395 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 KLF6Q99612 283 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 ZSCAN5AQ9BUG6 496 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 PCMTD2Q9NV79 361 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 KCTD5Q9NXV2 234 aa17.04■□□□□ 0.32
CCDC28B-202ENST00000421922 NKIRAS1Q9NYS0 192 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms