RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CNTN5O94779 1100 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 GLRBP48167 497 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 EPHB3P54753 998 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 KLC1Q07866 573 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 ITKQ08881 620 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 SLC10A7Q0GE19 358 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 POLD3Q15054 466 aaPredicted RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 ACAP2Q15057 778 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 LSM12Q3MHD2 195 aaKnown RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 ALFQ53S48 1182 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 RAP1GAP2Q684P5 730 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 ALG1LQ6GMV1 187 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 FAM45BPQ6NSW5 357 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 VITQ6UXI7 678 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 FRMD7Q6ZUT3 714 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 CILP2Q8IUL8 1156 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 BBS5Q8N3I7 341 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 FBXW8Q8N3Y1 598 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 OR13J1Q8NGT2 312 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 GPR150Q8NGU9 434 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 ARRDC2Q8TBH0 407 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 FAM45AQ8TCE6 357 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 DTX3LQ8TDB6 740 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 HEXDCQ8WVB3 486 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 SMARCD2Q92925 531 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 MAELQ96JY0 434 aaKnown RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 ZNF184Q99676 751 aaPredicted RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 TRMOQ9BU70 441 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 TTLL2Q9BWV7 592 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 POLR1EQ9GZS1 481 aaKnown RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 S100A14Q9HCY8 104 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 ZNF334Q9HCZ1 680 aaPredicted RBP14.8□□□□□ -0.04
USP4-203ENST00000415188 LTB4R2Q9NPC1 389 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 BCAP29Q9UHQ4 241 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 R4GN57 208 aa14.8□□□□□ -0.04
USP4-203ENST00000415188 A0A1W2PRU2 124 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 SHISA7A6NL88 538 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 FAM170BA6NMN3 283 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 WISP3O95389 354 aaPredicted RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 ATXN1LP0C7T5 689 aaKnown RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 ALDH1A3P47895 512 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 MTTPP55157 894 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 PRAMEP78395 509 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 XIAPP98170 497 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 DSC2Q02487 901 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 TBL3Q12788 808 aaKnown RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 TAF10Q12962 218 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 PLD1Q13393 1074 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 LBRQ14739 615 aaKnown RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 GSTA3Q16772 222 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 SIRPB2Q5JXA9 342 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 HECTD2Q5U5R9 776 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 CNSTQ6PJW8 725 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 C1orf210Q8IVY1 113 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 DEFB107AQ8IZN7 70 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 KDM1BQ8NB78 822 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 TXNDC5Q8NBS9 432 aaKnown RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 LEMD2Q8NC56 503 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 IGSF8Q969P0 613 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 PSMG2Q969U7 264 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 RPRD1AQ96P16 312 aaPredicted RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 SEPT5Q99719 369 aaPredicted RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 POPDC3Q9HBV1 291 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 ZDHHC2Q9UIJ5 367 aa14.79□□□□□ -0.04
USP4-203ENST00000415188 PTPRZ1P23471 2315 aaPredicted RBP14.79□□□□□ -0.04
USP4-203ENST00000415188 RIF1Q5UIP0 2472 aaKnown RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 ANKRD36A6QL64 1941 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 SMNDC1O75940 238 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP4-203ENST00000415188 OGNP20774 298 aaKnown RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 TACR2P21452 398 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 ABL2P42684 1182 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 ZNF235Q14590 738 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 RFTN1Q14699 578 aaPredicted RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 RALGPS1Q5JS13 557 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 TRIM68Q6AZZ1 485 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 ANO7Q6IWH7 933 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 GAREM2Q75VX8 874 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 DNAJB7Q7Z6W7 309 aaPredicted RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 ZNF354CQ86Y25 554 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 MAML2Q8IZL2 1156 aaPredicted RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 CCNYL1Q8N7R7 359 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 KYQ8NBH2 561 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 OVCA2Q8WZ82 227 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 FAM136AQ96C01 138 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 MIEF2Q96C03 454 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 RSPRY1Q96DX4 576 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 UBXN10Q96LJ8 280 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 LENG8Q96PV6 779 aaPredicted RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 TRMT61BQ9BVS5 477 aaKnown RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 OSBPL1AQ9BXW6 950 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 MAGEH1Q9H213 219 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 ATXN3LQ9H3M9 355 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 BRD9Q9H8M2 597 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 HACD3Q9P035 362 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 UXTQ9UBK9 157 aaPredicted RBP14.78□□□□□ -0.04
USP4-203ENST00000415188 VWA7Q9Y334 891 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 WASF2Q9Y6W5 498 aa14.78□□□□□ -0.04
USP4-203ENST00000415188 HEPACAM2A8MVW5 462 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 F5H5T6 163 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 IPO13O94829 963 aaKnown RBP14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms