RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 PPP2CBP62714 309 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PPP2CAP67775 309 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 DLG1Q12959 904 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CTTNQ14247 550 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 PTK2BQ14289 1009 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CYTH1Q15438 398 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SURF1Q15526 300 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 MOGQ16653 247 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TRIM16LQ309B1 348 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 DACT2Q5SW24 774 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 WDR78Q5VTH9 848 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ATG16L1Q676U5 607 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SPOPLQ6IQ16 392 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 LVRNQ6Q4G3 990 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 GPR141Q7Z602 305 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ITIH5Q86UX2 942 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ZNF354CQ86Y25 554 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 FAM90A1Q86YD7 464 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 LSMEM2Q8N112 164 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ZCCHC9Q8N567 271 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 METTL25Q8N6Q8 603 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SPERTQ8NA61 448 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 RBM15BQ8NDT2 890 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 TSPAN14Q8NG11 270 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ACMSDQ8TDX5 336 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SLC26A7Q8TE54 656 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TRUB1Q8WWH5 349 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 RASSF5Q8WWW0 418 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 LARP4BQ92615 738 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 APBB2Q92870 758 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 GJA10Q969M2 543 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 DCUN1D1Q96GG9 259 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 APIPQ96GX9 242 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 LMF1Q96S06 567 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 KCNK16Q96T55 309 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PSD2Q9BQI7 771 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 HIPK3Q9H422 1215 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 AGO3Q9H9G7 860 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 PARVGQ9HBI0 331 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SLC38A10Q9HBR0 1119 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CNGB3Q9NQW8 809 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 OLFML3Q9NRN5 406 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SIDT1Q9NXL6 827 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 TBK1Q9UHD2 729 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CNOT11Q9UKZ1 510 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 PSMD13Q9UNM6 376 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PCDHA1Q9Y5I3 950 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 N6AMT1Q9Y5N5 214 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SLC30A1Q9Y6M5 507 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CEP250Q9BV73 2442 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 WDR87Q6ZQQ6 2873 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ROBO3Q96MS0 1386 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 DYTNA2CJ06 578 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ARHGAP42A6NI28 874 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SYCE1LA8MT33 242 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CAPN14A8MX76 684 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 B5MCH6 92 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TNPO2O14787 897 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 SLC22A1O15245 554 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 AQP9O43315 295 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 HOXA3O43365 443 aaPredicted RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 SPOPO43791 374 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TYROBPO43914 113 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 FAM189A1O60320 539 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PRDM1O75626 825 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 MTA2O94776 668 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 KLHL2O95198 593 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SNRPA1P09661 255 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 POLR2MP0CAP2 368 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CCDC130P13994 396 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 IL9P15248 144 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ATP6V1B1P15313 513 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TSHRP16473 764 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PSMC3P17980 439 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 AOC1P19801 751 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 RPA3P35244 121 aaPredicted RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 SLC1A1P43005 524 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 MAGEA4P43358 317 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 HTR3AP46098 478 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ENTPD1P49961 510 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ITGA8P53708 1063 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 IFIT5Q13325 482 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 PDE1CQ14123 709 aaPredicted RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 VGLL4Q14135 290 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SF3B3Q15393 1217 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 PHKG1Q16816 387 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 KLHL38Q2WGJ6 581 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ANKDD1AQ495B1 522 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 KHDC1LQ5JSQ8 128 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TTC27Q6P3X3 843 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 SEM1Q6ZVN7 128 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 NEK10Q6ZWH5 1172 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ANKS1BQ7Z6G8 1248 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PPP1R3BQ86XI6 285 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 MMAAQ8IVH4 418 aaKnown RBP5.5□□□□□ -1.53
CLK1-202ENST00000409403 GPR135Q8IZ08 494 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 CCDC33Q8N5R6 958 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 ATP6V0D2Q8N8Y2 350 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 PCYOX1LQ8NBM8 494 aa5.5□□□□□ -1.53
CLK1-202ENST00000409403 TNIP2Q8NFZ5 429 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms