RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DEPDC5O75140 1603 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CASKO14936 926 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 METTL18O95568 372 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RLN2P04090 185 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NTRK1P04629 796 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RPLP0P05388 317 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PGRP06401 933 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SLC35G4P0C7Q5 338 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PKMP14618 531 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 IGFBP5P24593 272 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RPL4P36578 427 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ERFP50548 548 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 MPP1Q00013 466 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SCRN3Q0VDG4 424 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SMAD1Q15797 465 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PLEKHG6Q3KR16 790 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 MPPE1Q53F39 396 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NIPAL1Q6NVV3 410 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 C16orf46Q6P387 395 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 FAM131AQ6UXB0 335 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 APTXQ7Z2E3 356 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ADGRD2Q7Z7M1 963 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RANBP3LQ86VV4 465 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ATCAYQ86WG3 371 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GOLM1Q8NBJ4 401 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 UXS1Q8NBZ7 420 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 OR5K1Q8NHB7 308 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PIGXQ8TBF5 258 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PRCCQ92733 491 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PCDHB16Q9NRJ7 776 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ABCB10Q9NRK6 738 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 DNAJB9Q9UBS3 223 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF222Q9UK12 451 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GPC6Q9Y625 555 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LINC00854A0A1B0GVQ3 168 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TCRBV9S1A1TA0A576 114 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CHURC1-FNTBB4DL54 471 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 M0QX08 132 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SLC7A4O43246 635 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TLX3O43711 291 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KLRC4O43908 158 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CCNKO75909 580 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SNX4O95219 450 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GJB6O95452 261 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NDST3O95803 873 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 IFNA7P01567 189 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CD2P06729 351 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 FESP07332 822 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 DBTP11182 482 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PBLDP30039 288 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GSSP48637 474 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 POLR2JP52435 117 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RPL38P63173 70 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CRTC3Q6UUV7 619 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LAPTM4BQ86VI4 370 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ADGRG2Q8IZP9 1017 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CDYL2Q8N8U2 506 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KLHL23Q8NBE8 558 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 OR52K1Q8NGK4 314 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NAT14Q8WUY8 206 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 OR8D1Q8WZ84 308 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RHBDF1Q96CC6 855 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RCN3Q96D15 328 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KLHL32Q96NJ5 620 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF599Q96NL3 588 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KCTD15Q96SI1 283 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ACO2Q99798 780 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM39BQ9GZU3 492 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ANKRA2Q9H9E1 313 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LRTM1Q9HBL6 345 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TAS2R1Q9NYW7 299 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ARMCX1Q9P291 453 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 XPR1Q9UBH6 696 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SLIT3O75094 1523 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CACNB4O00305 520 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KLF11O14901 512 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GRM6O15303 877 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PAPSS1O43252 624 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PRODHO43272 600 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 OR10H2O60403 315 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KRT36O76013 467 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ESR1P03372 595 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 HOXC8P31273 242 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 GRIA1P42261 906 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ATN1P54259 1190 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TAS2R41P59536 307 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ARPC4P59998 168 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TEX44Q53QW1 395 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 C6orf52Q5T4I8 152 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PCDH20Q8N6Y1 951 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TLCD1Q96CP7 247 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 DNAJC19Q96DA6 116 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PURBQ96QR8 312 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TUBGCP5Q96RT8 1024 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 KLK14Q9P0G3 267 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 OR10H1Q9Y4A9 318 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CASZ1Q86V15 1759 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ASTN1O14525 1302 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 A0A0J9YYE9 177 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 DUXAA6NLW8 204 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms