RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 LRRN4CLQ8ND94 238 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 OR6K2Q8NGY2 324 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 AENQ8WTP8 325 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CAPZA3Q96KX2 299 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 POPDC3Q9HBV1 291 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 SYBUQ9NX95 663 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 SEPT10Q9P0V9 454 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 DMGDHQ9UI17 866 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PNMA8BQ9ULN7 279 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ITM2BQ9Y287 266 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 FNDC3AQ9Y2H6 1198 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TTLL3Q9Y4R7 772 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 A0A1B0GTQ1 180 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 SLU7O95391 586 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CEACAM5P06731 702 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PNLIPP16233 465 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ACTN2P35609 894 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 AFF3P51826 1226 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TIAL1Q01085 375 aaKnown RBP eCLIP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CTBSQ01459 385 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 NFATC2Q13469 925 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 STAT4Q14765 748 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ANKRD20A4Q4UJ75 823 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 MARK2Q7KZI7 788 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ADGRG6Q86SQ4 1221 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PELI3Q8N2H9 469 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 IPMKQ8NFU5 416 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 HNRNPLLQ8WVV9 542 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 HIC2Q96JB3 615 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 FSD1LQ9BXM9 530 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PPCSQ9HAB8 311 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PLK4O00444 970 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 MMP20O60882 483 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 SRP72O76094 671 aaKnown RBP6.96□□□□□ -1.29
LIMA1-202ENST00000394943 PRLHRP49683 370 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 ARL4CP56559 192 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 LRP8Q14114 963 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 ELF2Q15723 593 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 SKIDA1Q1XH10 827 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 RNF187Q5TA31 235 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-202ENST00000394943 C8orf74Q6P047 294 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 NEK10Q6ZWH5 1172 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 GLT6D1Q7Z4J2 308 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 ADAT2Q7Z6V5 191 aaKnown RBP6.96□□□□□ -1.29
LIMA1-202ENST00000394943 TDRPQ86YL5 185 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 IGDCC3Q8IVU1 814 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 PPHLN1Q8NEY8 458 aaKnown RBP6.96□□□□□ -1.29
LIMA1-202ENST00000394943 OR14C36Q8NHC7 312 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 ANKRD7Q92527 254 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 GLYATL1Q969I3 302 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 GPR174Q9BXC1 333 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 FAM83DQ9H4H8 585 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 TRIM39Q9HCM9 518 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 TRNAU1APQ9NX07 287 aaKnown RBP6.96□□□□□ -1.29
LIMA1-202ENST00000394943 SLC6A14Q9UN76 642 aa6.96□□□□□ -1.29
LIMA1-202ENST00000394943 QSOX1O00391 747 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 NUAK1O60285 661 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 PMPCBO75439 489 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 CD38P28907 300 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TERF1P54274 439 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 GPX6P59796 221 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 RPL6Q02878 288 aaKnown RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TNFAIP8L3Q5GJ75 292 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 CERCAMQ5T4B2 595 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 CCNI2Q6ZMN8 369 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 NRROSQ86YC3 692 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 PLA2G15Q8NCC3 412 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ZFPM2Q8WW38 1151 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF514Q96K75 400 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TTC25Q96NG3 672 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 BOCQ9BWV1 1114 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TPSD1Q9BZJ3 242 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TMEM74BQ9NUR3 256 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ZDHHC3Q9NYG2 299 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 BCCIPQ9P287 314 aaKnown RBP eCLIP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF180Q9UJW8 692 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ARL5AQ9Y689 179 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 SLCO1B1Q9Y6L6 691 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 C1orf232A0A0U1RR37 186 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TLR4O00206 839 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 FPGTO14772 594 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 BCAT2O15382 392 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 CBFA2T3O75081 653 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 NDUFS2O75306 463 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 LMNAP02545 664 aaKnown RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ETV3P41162 512 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 DHX9Q08211 1270 aaKnown RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 RPA4Q13156 261 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 OLIG2Q13516 323 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TEAD4Q15561 434 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 TRMT10CQ7L0Y3 403 aaKnown RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 NXPE1Q8N323 547 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 FBXO15Q8NCQ5 510 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-202ENST00000394943 NSMCE4AQ9NXX6 385 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 BFARQ9NZS9 450 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 SEMA5BQ9P283 1151 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 GULP1Q9UBP9 304 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 ANAPC5Q9UJX4 755 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 MED16Q9Y2X0 877 aa6.96□□□□□ -1.3
LIMA1-202ENST00000394943 LY6G6EA0A0G2JKS1 128 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms