RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ILKAPQ9H0C8 392 aaPredicted RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SLC39A2Q9NP94 309 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 ZNF229Q9UJW7 825 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 MRPS7Q9Y2R9 242 aaKnown RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 GPSM3Q9Y4H4 160 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 EPN1Q9Y6I3 576 aaPredicted RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 CNOT1A5YKK6 2376 aaKnown RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 IDSB3KWA1 339 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 KRIT1O00522 736 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 TP73O15350 636 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 TEX33O43247 280 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 PPP1R11O60927 126 aaPredicted RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 GCATO75600 419 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 WISP1O95388 367 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 IDSP22304 550 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 PMLP29590 882 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 EEF1DP29692 281 aaKnown RBP8.1□□□□□ -1.11
LIMS1-203ENST00000393310 CSRP3P50461 194 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SLC5A3P53794 718 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 PLTPP55058 493 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 KLHL38Q2WGJ6 581 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 POM121L1PQ3SYA9 428 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SDHAF4Q5VUM1 108 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 ARL8AQ96BM9 186 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 VCPIP1Q96JH7 1222 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 C5orf34Q96MH7 638 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SLC46A2Q9BY10 475 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 THAP9Q9H5L6 903 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 ZDHHC6Q9H6R6 413 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 ASNSD1Q9NWL6 643 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 GIN1Q9NXP7 522 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SELENONQ9NZV5 590 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 LAMP5Q9UJQ1 280 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 PYCARDQ9ULZ3 195 aa8.1□□□□□ -1.11
LIMS1-203ENST00000393310 SPEF2Q9C093 1822 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 PIPSLA2A3N6 862 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 FAM47E-STBD1D6RA91 191 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NPIPA7E9PJI5 369 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 RAMP2O60895 175 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 LILRB5O75023 590 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 CYP17A1P05093 508 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NPIPA8P0DM63 369 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 COX6B1P14854 86 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ACADSP16219 412 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NMT1P30419 496 aaKnown RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 GPR1P46091 355 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 YPEL5P62699 121 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 CDR2Q01850 454 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 XRCC4Q13426 336 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TRIP4Q15650 581 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SLC10A6Q3KNW5 377 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 HES5Q5TA89 166 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 DNAJC24Q6P3W2 148 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ARHGAP36Q6ZRI8 547 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 FRA10AC1Q70Z53 315 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 EXOC3L1Q86VI1 746 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 PCDH20Q8N6Y1 951 aaKnown RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ZNF655Q8N720 491 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 LRRC20Q8TCA0 184 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SLC2A14Q8TDB8 520 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SKA2Q8WVK7 121 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TP53INP1Q96A56 240 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 WDR92Q96MX6 357 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 HSD17B14Q9BPX1 270 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 MAGEB5Q9BZ81 275 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 KLHL4Q9C0H6 718 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 XKR8Q9H6D3 395 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NOL6Q9H6R4 1146 aaKnown RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TMEM8AQ9HCN3 771 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TAGLN3Q9UI15 199 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 RAXQ9Y2V3 346 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NCANO14594 1321 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 H0YJX3 145 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SLC37A4O43826 429 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 DEAF1O75398 565 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SCGB1D2O95969 90 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 MSR1P21757 451 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 LSSP48449 732 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ANTXR2P58335 489 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 HORMAD2Q8N7B1 307 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ZNF527Q8NB42 609 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SPATA16Q9BXB7 569 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ARNT2Q9HBZ2 717 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 MRPL47Q9HD33 250 aaKnown RBP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SEMA3GQ9NS98 782 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 CDC14AQ9UNH5 594 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TRIM33Q9UPN9 1127 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 SIK3Q9Y2K2 1263 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 EML1O00423 815 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 KERAO60938 352 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TNFRSF21O75509 655 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NR3C1P04150 777 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 FAM228BP0C875 321 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 ALDH4A1P30038 563 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 AKT1P31749 480 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 TRA2AQ13595 282 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 EFTUD2Q15029 972 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMS1-203ENST00000393310 MAPKAPK3Q16644 382 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 NT5DC1Q5TFE4 455 aa8.09□□□□□ -1.11
LIMS1-203ENST00000393310 C1orf146Q5VVC0 180 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms