RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 GHRHRQ02643 423 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PTPRCAPQ14761 206 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PAFAH1B3Q15102 231 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 MPPE1Q53F39 396 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SPESP1Q6UW49 350 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 C14orf80Q86SX3 495 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.15□□□□□ -0.35e-8■■■■■ 204.6
NPHP4-203ENST00000378169 EID3Q8N140 333 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SMAD5Q99717 465 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 RTKNQ9BST9 563 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 NOL11Q9H8H0 719 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 BRD9Q9H8M2 597 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 NDUFA13Q9P0J0 144 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 A0A1W2PRU2 124 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SLC22A3O75751 556 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 CNPP09543 421 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 IDO1P14902 403 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 ATP6V1C1P21283 382 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 GMPRP36959 345 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 CLCQ05315 142 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 CDHR3Q6ZTQ4 885 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 UBE2R2Q712K3 238 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 LPCAT2Q7L5N7 544 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PQLC1Q8N2U9 271 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 NR1H4Q96RI1 486 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 C9orf16Q9BUW7 83 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 UGT2B28Q9BY64 529 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PRPF19Q9UMS4 504 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 TMEM233B4DJY2 109 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 CDK14O94921 469 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 HSMCR30P0CW71 290 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 RANBP1P43487 201 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SLC11A1P49279 550 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PRKAG1P54619 331 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 ACAP2Q15057 778 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 SLC9B1Q4ZJI4 515 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PITRM1Q5JRX3 1037 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 RBM20Q5T481 1227 aaKnown RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 PPP4R4Q6NUP7 873 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 TXNDC11Q6PKC3 985 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 KBTBD7Q8WVZ9 684 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 IPPKQ9H8X2 491 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 AHSPQ9NZD4 102 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 MYRFQ9Y2G1 1151 aa13.15□□□□□ -0.3
NPHP4-203ENST00000378169 ARIH1Q9Y4X5 557 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-203ENST00000378169 DHRS12A0PJE2 317 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 TIPRLO75663 272 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 EPN2O95208 641 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 GALNT2Q10471 571 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 PAQR3Q6TCH7 311 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 SERINC5Q86VE9 423 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 C2orf73Q8N5S3 287 aaPredicted RBP13.15□□□□□ -0.31
NPHP4-203ENST00000378169 ZNF557Q8N988 423 aaPredicted RBP13.15□□□□□ -0.31
NPHP4-203ENST00000378169 SIDT2Q8NBJ9 832 aaKnown RBP13.15□□□□□ -0.31
NPHP4-203ENST00000378169 OR10T2Q8NGX3 314 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 PTCD3Q96EY7 689 aaKnown RBP13.15□□□□□ -0.31
NPHP4-203ENST00000378169 APOLD1Q96LR9 279 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 RIBC2Q9H4K1 309 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 ARHGEF3Q9NR81 526 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 EIF2B4Q9UI10 523 aaKnown RBP13.15□□□□□ -0.31
NPHP4-203ENST00000378169 ASF1AQ9Y294 204 aa13.15□□□□□ -0.31
NPHP4-203ENST00000378169 MGRN1O60291 552 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 NIPSNAP2O75323 286 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 GSNP06396 782 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UGT1A6P19224 532 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UGT1A1P22309 533 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UGT1A4P22310 534 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UGT1A3P35503 534 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UGT1A5P35504 534 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 PDK3Q15120 406 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UPP1Q16831 310 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ALFQ53S48 1182 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 RPS27LQ71UM5 84 aaKnown RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 GPR180Q86V85 440 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ZC3HC1Q86WB0 502 aaKnown RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 CLVS1Q8IUQ0 354 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 OR52E6Q96RD3 313 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 SMOC2Q9H3U7 446 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 CLIC5Q9NZA1 410 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UNCXA6NJT0 531 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 RASSF9O75901 435 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ALDH1A2O94788 518 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 OR4F21O95013 312 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 PRKCHP24723 683 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 HCAR3P49019 387 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 UBE3AQ05086 875 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ACSBG2Q5FVE4 666 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 SERPINA9Q86WD7 417 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 RALGPS2Q86X27 583 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 OR52B2Q96RD2 323 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 CIB1Q99828 191 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 RPL26L1Q9UNX3 145 aaKnown RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 KCNE2Q9Y6J6 123 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ANKDD1BA6NHY2 528 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 HNRNPCL2B2RXH8 293 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 ZNF865P0CJ78 1059 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-203ENST00000378169 PSMB9P28065 219 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 CRATP43155 626 aa13.14□□□□□ -0.31
NPHP4-203ENST00000378169 AFF1P51825 1210 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms