RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TIGD7Q6NT04 549 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 KLC3Q6P597 504 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 PKN3Q6P5Z2 889 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 WDR75Q8IWA0 830 aaKnown RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 CCDC117Q8IWD4 279 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 TERB1Q8NA31 727 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 OR7D4Q8NG98 312 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 FIBINQ8TAL6 211 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 PIP4K2CQ8TBX8 421 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 CYB5D2Q8WUJ1 264 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 MFSD3Q96ES6 412 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 CIPCQ9C0C6 399 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 C20orf27Q9GZN8 174 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 FAM96AQ9H5X1 160 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 STN1Q9H668 368 aaKnown RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 ZNF395Q9H8N7 513 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 GLOD4Q9HC38 313 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 LTB4R2Q9NPC1 389 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 CHRAC1Q9NRG0 131 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 C20orf96Q9NUD7 363 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-203ENST00000374116 TMEM248Q9NWD8 314 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 HCN2Q9UL51 889 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 ACTL7AQ9Y615 435 aa14.27□□□□□ -0.12
HMGA1-203ENST00000374116 WASH3PC4AMC7 463 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 APODP05090 189 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 PRKCGP05129 697 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 RHOCP08134 193 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 PABPC1P11940 636 aaKnown RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 GLULP15104 373 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ADRA1AP35348 466 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 TIE1P35590 1138 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ACVRL1P37023 503 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 SLC1A6P48664 564 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 NDST2P52849 883 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 GRSF1Q12849 480 aaKnown RBP eCLIP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 MPP3Q13368 585 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 FZD5Q13467 585 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 HSF5Q4G112 596 aaPredicted RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 PPM1JQ5JR12 505 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 PDPK2PQ6A1A2 396 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ZCCHC23Q6ZST2 131 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 CHST9Q7L1S5 443 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 NET1Q7Z628 596 aaPredicted RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ADIPOR2Q86V24 386 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ALYREFQ86V81 257 aaKnown RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 PIWIL2Q8TC59 973 aaKnown RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 LMLNQ96KR4 655 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 RPL10LQ96L21 214 aaKnown RBP14.27□□□□□ -0.13
HMGA1-203ENST00000374116 CATSPER2Q96P56 530 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 ACOX2Q99424 681 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 AGAP2Q99490 1192 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 SLX1AQ9BQ83 275 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 TBL1YQ9BQ87 522 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 APOL2Q9BQE5 337 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 MCMBPQ9BTE3 642 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 NMUR2Q9GZQ4 415 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 MUC3BQ9H195 1237 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 LMAN1LQ9HAT1 526 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 UBP1Q9NZI7 540 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 TMEM216Q9P0N5 145 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 COPG2Q9UBF2 871 aa14.27□□□□□ -0.13
HMGA1-203ENST00000374116 GYG2O15488 501 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 ATP6V1G1O75348 118 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 UBTFL6P0CB48 400 aaPredicted RBP14.26□□□□□ -0.13
HMGA1-203ENST00000374116 KITP10721 976 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 CPA3P15088 417 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 TPH1P17752 444 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 WASP42768 502 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 GEMP55040 296 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 TRMT5Q32P41 509 aaKnown RBP14.26□□□□□ -0.13
HMGA1-203ENST00000374116 PCID2Q5JVF3 399 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 DENND5AQ6IQ26 1287 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 SPATA24Q86W54 205 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 ZNF687Q8N1G0 1237 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 ZNF366Q8N895 744 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 USP33Q8TEY7 942 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 PPP4R1Q8TF05 950 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 MCUR1Q96AQ8 359 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 PRR11Q96HE9 360 aaPredicted RBP14.26□□□□□ -0.13
HMGA1-203ENST00000374116 SHDQ96IW2 340 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 FEM1AQ9BSK4 669 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 SPON2Q9BUD6 331 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 C2orf42Q9NWW7 574 aa14.26□□□□□ -0.13
HMGA1-203ENST00000374116 CAPN14A8MX76 684 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 MAN2B1O00754 1011 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 SNAP91O60641 907 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 CHRNB1P11230 501 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 KCNA4P22459 653 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 NMBRP28336 390 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 EIF2DP41214 584 aaKnown RBP14.25□□□□□ -0.13
HMGA1-203ENST00000374116 GRIA2P42262 883 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 HPCAP84074 193 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 CCINQ13939 588 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 SMAD1Q15797 465 aaKnown RBP14.25□□□□□ -0.13
HMGA1-203ENST00000374116 PITRM1Q5JRX3 1037 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 EGFLAMQ63HQ2 1017 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 LINGO4Q6UY18 593 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 CMC1Q7Z7K0 106 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 CLEC14AQ86T13 490 aa14.25□□□□□ -0.13
HMGA1-203ENST00000374116 TTC7BQ86TV6 843 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms