RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OBP2AQ9NY56 170 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 COMMD3-BMI1R4GMX3 469 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 C15orf38-AP3S2A0A0A6YYH1 394 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 REM1O75628 298 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 STAU1O95793 577 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 DLDP09622 509 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 TCP1P17987 556 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 UGT1A6P19224 532 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 MMP13P45452 471 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 GNPDA1P46926 289 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 LEPRP48357 1165 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 FCHO2Q0JRZ9 810 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 HKDC1Q2TB90 917 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 FCRL6Q6DN72 434 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 KCNIP4Q6PIL6 250 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 DNM1P34Q6PK57 102 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 SMIM5Q71RC9 77 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 KCNK18Q7Z418 384 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ZMIZ2Q8NF64 920 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 OR7D4Q8NG98 312 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 OR4C15Q8NGM1 316 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 APOBEC4Q8WW27 367 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 TMEM234Q8WY98 164 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 OR2M4Q96R27 311 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 NT5MQ9NPB1 228 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 AP4E1Q9UPM8 1137 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 GNEQ9Y223 722 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 PBRM1Q86U86 1689 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 RNASET2O00584 256 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 TOP3BO95985 862 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 NQO1P15559 274 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 ZNF28P17035 718 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 FBLP22087 321 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 SSR2P43308 183 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 POLD2P49005 469 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 FNTBP49356 437 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 SERPINB9P50453 376 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 CDH4P55283 916 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 IRF8Q02556 426 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 DBPQ10586 325 aaPredicted RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 MED22Q15528 200 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 TRIP6Q15654 476 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 MAPK14Q16539 360 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 LDLRAD1Q5T700 205 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 AGAP9Q5VTM2 703 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 PHLDB3Q6NSJ2 640 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 C16orf89Q6UX73 402 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ZYG11AQ6WRX3 759 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ZNF771Q7L3S4 317 aaPredicted RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 ADGRG6Q86SQ4 1221 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 AMZ2Q86W34 360 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 SDR16C5Q8N3Y7 309 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 SLC44A3Q8N4M1 653 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 CNTD1Q8N815 330 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ANKFN1Q8N957 763 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 TXNDC5Q8NBS9 432 aaKnown RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 CLHC1Q8NHS4 586 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 B4GALNT2Q8NHY0 566 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 FAM76AQ8TAV0 307 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ZNF418Q8TF45 676 aaPredicted RBP4.09□□□□□ -1.76
USH2A-202ENST00000366942 USP28Q96RU2 1077 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 GPR61Q9BZJ8 451 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 CYP4F12Q9HCS2 524 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 ABCB6Q9NP58 842 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 PAK5Q9P286 719 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 B4GALT6Q9UBX8 382 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 FIS1Q9Y3D6 152 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 KCPQ6ZWJ8 1503 aa4.09□□□□□ -1.76
USH2A-202ENST00000366942 A0A1W2PQD8 194 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PMS2P1A4D2B8 440 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 FAM205CA6NFA0 338 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ARHGEF33A8MVX0 844 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 C2orf74A8MZ97 194 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 DTNBO60941 627 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SPAG6O75602 509 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 WEE2P0C1S8 567 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 FDXRP22570 491 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ATP5F1P24539 256 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 TYK2P29597 1187 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 UQCRC1P31930 480 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 RNF144AP50876 292 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 IRF9Q00978 393 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 KLC1Q07866 573 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TAF10Q12962 218 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 FAM189A2Q15884 450 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CRY1Q16526 586 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 EIF2S3LQ2VIR3 472 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 CDKAL1Q5VV42 579 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 FAM171BQ6P995 826 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 C17orf99Q6UX52 265 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 FAM220AQ7Z4H9 259 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CREG2Q8IUH2 290 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 RAVER1Q8IY67 606 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 DEFB124Q8NES8 71 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PSMA8Q8TAA3 256 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ZNF483Q8TF39 744 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 ASB15Q8WXK1 588 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 RAD54LQ92698 747 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SPDL1Q96EA4 605 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms