RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OBP2AQ9NY56 170 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 TAS2R13Q9NYV9 303 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 CDH7Q9ULB5 785 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 SLC27A6Q9Y2P4 619 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 DOCK8Q8NF50 2099 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 TMEM114B3SHH9 223 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 GAPDHSO14556 408 aaPredicted RBP13.33□□□□□ -0.28
HMGB1-202ENST00000339872 SRPRAP08240 638 aaKnown RBP13.33□□□□□ -0.28
HMGB1-202ENST00000339872 BPIP17213 487 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 TFEBP19484 476 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 AQP5P55064 265 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ST8SIA6P61647 398 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 VITQ6UXI7 678 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 NXPE3Q969Y0 559 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 MOCOSQ96EN8 888 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 MCCC1Q96RQ3 725 aaPredicted RBP13.33□□□□□ -0.28
HMGB1-202ENST00000339872 FAM83CQ9BQN1 747 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ASB8Q9H765 288 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 BRD9Q9H8M2 597 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ECT2Q9H8V3 914 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 KCNK4Q9NYG8 393 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 DEC1Q9P2X7 70 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 APPL1Q9UKG1 709 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 PPIL1Q9Y3C6 166 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 WASF2Q9Y6W5 498 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 GLYATL1P3A0A0U1RQE8 302 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 A0A1W2PQ67 120 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 PRRT4C9JH25 899 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 LEFTY1O75610 366 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 RBP1P09455 135 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 CHRM1P11229 460 aaPredicted RBP13.32□□□□□ -0.28
HMGB1-202ENST00000339872 PKMP14618 531 aaKnown RBP13.32□□□□□ -0.28
HMGB1-202ENST00000339872 LHCGRP22888 699 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 SPAM1P38567 509 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 SCTRP47872 440 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 PRKAA2P54646 552 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 NAGLUP54802 743 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 PDGFRLQ15198 375 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 GAB4Q2WGN9 574 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 CTSL3PQ5NE16 218 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 GRAMD4Q6IC98 578 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 WDR75Q8IWA0 830 aaKnown RBP13.32□□□□□ -0.28
HMGB1-202ENST00000339872 STK40Q8N2I9 435 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 TXNDC5Q8NBS9 432 aaKnown RBP13.32□□□□□ -0.28
HMGB1-202ENST00000339872 C19orf43Q9BQ61 176 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 POMKQ9H5K3 350 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 ALG9Q9H6U8 611 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 ACTR5Q9H9F9 607 aaPredicted RBP13.32□□□□□ -0.28
HMGB1-202ENST00000339872 IL26Q9NPH9 171 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 HPS4Q9NQG7 708 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 ELOVL2Q9NXB9 296 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 SLC12A4Q9UP95 1085 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 MED16Q9Y2X0 877 aa13.32□□□□□ -0.28
HMGB1-202ENST00000339872 NEMP2A6NFY4 417 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 GOLGA8CPA6NN73 597 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ZBTB14O43829 449 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 NIPSNAP2O75323 286 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ITGALP20701 1170 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PTGER3P43115 390 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 LIG3P49916 1009 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 POLR2LP62875 67 aaKnown RBP13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PFKPQ01813 784 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 NFATC2Q13469 925 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 GRM2Q14416 872 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 GALNTL6Q49A17 601 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ARSIQ5FYB1 569 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 BRAT1Q6PJG6 821 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 SNX20Q7Z614 316 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 MTDHQ86UE4 582 aaKnown RBP13.31□□□□□ -0.28
HMGB1-202ENST00000339872 SERPINA9Q86WD7 417 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 GPR21Q99679 349 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PNPOQ9NVS9 261 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 B4GALT6Q9UBX8 382 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 IL36AQ9UHA7 158 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ZFP69BQ9UJL9 534 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PLA2G4CQ9UP65 541 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 MUC22E2RYF6 1773 aaPredicted RBP13.31□□□□□ -0.28
HMGB1-202ENST00000339872 VPS26AO75436 327 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PYGLP06737 847 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 CTSLP07711 333 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 CD1DP15813 335 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ATP5F1P24539 256 aaPredicted RBP13.31□□□□□ -0.28
HMGB1-202ENST00000339872 SERPINB3P29508 390 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ZBTB16Q05516 673 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ASPHQ12797 758 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PAQR3Q6TCH7 311 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 CERS6Q6ZMG9 384 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 TDHQ8IZJ6 230 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF781Q8N8C0 355 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 GPR26Q8NDV2 337 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 PBXIP1Q96AQ6 731 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 WWP1Q9H0M0 922 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 SYTL2Q9HCH5 934 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 CYP4F12Q9HCS2 524 aa13.31□□□□□ -0.28
HMGB1-202ENST00000339872 E5RI56 91 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 MYO1CO00159 1063 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ESR1P03372 595 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CHRNGP07510 517 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CA5AP35218 305 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms