RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ARSFP54793 590 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 SH3BP2P78314 561 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 DGCR6Q14129 220 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TMEM132DQ14C87 1099 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 NOMO2Q5JPE7 1267 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 OTUD1Q5VV17 481 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 IER5Q5VY09 327 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 FAAH2Q6GMR7 532 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LAIR2Q6ISS4 152 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 HACD2Q6Y1H2 254 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 MOB2Q70IA6 237 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 CTU1Q7Z7A3 348 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 KIAA2013Q8IYS2 634 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 SLC22A15Q8IZD6 547 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LPAR1Q92633 364 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TMEM125Q96AQ2 219 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 HOXD1Q9GZZ0 328 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ALG9Q9H6U8 611 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 INTS10Q9NVR2 710 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 GTF2IRD1Q9UHL9 959 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 CARD8Q9Y2G2 431 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 IFT52Q9Y366 437 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 PCDHA9Q9Y5H5 950 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 DNAJC15Q9Y5T4 150 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ZBTB42B2RXF5 422 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 M0QYT0 321 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LRIG2O94898 1065 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 MAP2K4P45985 399 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 NCS1P62166 190 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LRIT3Q3SXY7 679 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TECRLQ5HYJ1 363 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 THAP5Q7Z6K1 395 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 WDR12Q9GZL7 423 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 FZD8Q9H461 694 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 DKK3Q9UBP4 350 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 UTS2RQ9UKP6 389 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 INVSQ9Y283 1065 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 M0R3G1 203 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 UPK1AO00322 258 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 CCL22O00626 93 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PIP5K1BO14986 540 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 FARP2O94887 1054 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 ITGB6P18564 788 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PRKACGP22612 351 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 NOS2P35228 1153 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 CHRNA4P43681 627 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 SLC12A2P55011 1212 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 OR4D2P58180 307 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 CCNA1P78396 465 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 TUBA3CQ13748 450 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 NFYCQ13952 458 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 TXNDC11Q6PKC3 985 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 SCIMPQ6UWF3 145 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 RYBPQ8N488 228 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 CHDHQ8NE62 594 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 OR7A2PQ8NGA2 310 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PNPT1Q8TCS8 783 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 OTUD5Q96G74 571 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 NSUN5Q96P11 429 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 HOPXQ9BPY8 73 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 SMOC2Q9H3U7 446 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 INTS7Q9NVH2 962 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 ZNF214Q9UL59 606 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 UNCXA6NJT0 531 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 KRT75O95678 551 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 HRH2P25021 359 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 RPS6KA2Q15349 733 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 HABP4Q5JVS0 413 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 C6orf141Q5SZD1 244 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 HFE2Q6ZVN8 426 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PAGE2Q7Z2X7 111 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 MINDY1Q8N5J2 469 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 AGBL3Q8NEM8 1001 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 IPMKQ8NFU5 416 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 YTHDF1Q9BYJ9 559 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 AMBRA1Q9C0C7 1298 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 EML4Q9HC35 981 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PIGVQ9NUD9 493 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 PDE10AQ9Y233 779 aa13.41□□□□□ -0.26
CCDC88C-201ENST00000331194 IGKV6D-21A0A0A0MT36 114 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 DCLK1O15075 740 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 KCNK2O95069 426 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 GPIP06744 558 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ALOX5P09917 674 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 THRBP10828 461 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 NPY2RP49146 381 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 COPZ1P61923 177 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 MBTD1Q05BQ5 628 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 CD47Q08722 323 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 SKIV2LQ15477 1246 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 STXBP2Q15833 593 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 IRAK1BP1Q5VVH5 260 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 SULF1Q8IWU6 871 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 FAM86B1Q8N7N1 296 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 RPL3LQ92901 407 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 TEPSINQ96N21 525 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 OAS3Q9Y6K5 1087 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 ASPDHA6ND91 283 aa13.4□□□□□ -0.26
CCDC88C-201ENST00000331194 NDUFS2O75306 463 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms