RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 HLA-EP13747 358 aa18.34■□□□□ 0.53
USP39-201ENST00000323701 YTHDF3Q7Z739 585 aaKnown RBP18.34■□□□□ 0.53
USP39-201ENST00000323701 MICALL1Q8N3F8 863 aa18.34■□□□□ 0.53
USP39-201ENST00000323701 ERLEC1Q96DZ1 483 aa18.34■□□□□ 0.53
USP39-201ENST00000323701 ZNF641Q96N77 438 aaPredicted RBP18.34■□□□□ 0.53
USP39-201ENST00000323701 GATA5Q9BWX5 397 aaPredicted RBP18.34■□□□□ 0.53
USP39-201ENST00000323701 TRIM55Q9BYV6 548 aa18.34■□□□□ 0.53
USP39-201ENST00000323701 TCF20Q9UGU0 1960 aaKnown RBP18.34■□□□□ 0.53
USP39-201ENST00000323701 ATXN2Q99700 1313 aaKnown RBP18.33■□□□□ 0.53
USP39-201ENST00000323701 IQCF5A8MTL0 148 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 H3BMM5 538 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 SRP72O76094 671 aaKnown RBP18.33■□□□□ 0.52
USP39-201ENST00000323701 TGDSO95455 350 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 LTA4HP09960 611 aaKnown RBP18.33■□□□□ 0.52
USP39-201ENST00000323701 SUOXP51687 545 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 FCHO2Q0JRZ9 810 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 DBN1Q16643 649 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 TECRLQ5HYJ1 363 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 PHTF2Q8N3S3 785 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 KIAA1958Q8N8K9 716 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 TXNDC5Q8NBS9 432 aaKnown RBP18.33■□□□□ 0.52
USP39-201ENST00000323701 PTERQ96BW5 349 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 TSPAN17Q96FV3 270 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 TCF12Q99081 682 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 HEPHQ9BQS7 1158 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 BOCQ9BWV1 1114 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 B4GALT6Q9UBX8 382 aa18.33■□□□□ 0.52
USP39-201ENST00000323701 ZBTB14O43829 449 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 NIPSNAP2O75323 286 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 UBOX5O94941 541 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 TROVE2P10155 538 aaKnown RBP eCLIP18.32■□□□□ 0.52
USP39-201ENST00000323701 CACNG1Q06432 222 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 PAQR3Q6TCH7 311 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 EP400NLQ6ZTU2 488 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 TPRG1Q6ZUI0 275 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 CCDC121Q6ZUS5 278 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 ISCA2Q86U28 154 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 TSNARE1Q96NA8 513 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 TMEM120AQ9BXJ8 343 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 MRPL46Q9H2W6 279 aaKnown RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 PNPOQ9NVS9 261 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 DEC1Q9P2X7 70 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 IKZF3Q9UKT9 509 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 SARDHQ9UL12 918 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 HCN2Q9UL51 889 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 TRIM13O60858 407 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 ATP5BP06576 529 aaKnown RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 CHRNGP07510 517 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 ZNF37AP17032 561 aaPredicted RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 OPRD1P41143 372 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 RECQLP46063 649 aaPredicted RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 RAD51Q06609 339 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 CHRNA6Q15825 494 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 FAM83EQ2M2I3 478 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 LCA5Q86VQ0 697 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 PLPP6Q8IY26 295 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 GIMAP7Q8NHV1 300 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 PRR11Q96HE9 360 aaPredicted RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 GPR21Q99679 349 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 MRPL57Q9BQC6 102 aaKnown RBP18.32■□□□□ 0.52
USP39-201ENST00000323701 ZNF576Q9H609 170 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 ALG9Q9H6U8 611 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 OBP2AQ9NY56 170 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 DNAJC16Q9Y2G8 782 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 USH1CQ9Y6N9 552 aa18.32■□□□□ 0.52
USP39-201ENST00000323701 RHOBTB1O94844 696 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 LTBRP36941 435 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 TTPAP49638 278 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 NAGLUP54802 743 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 ABCE1P61221 599 aaKnown RBP18.31■□□□□ 0.52
USP39-201ENST00000323701 NFATC2Q13469 925 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 TSNAXIP1Q2TAA8 658 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 MAVSQ7Z434 540 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 SERPINA9Q86WD7 417 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 PLCD3Q8N3E9 789 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 ABCG8Q9H221 673 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 SLC30A1Q9Y6M5 507 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 ZNF106Q9H2Y7 1883 aaKnown RBP18.31■□□□□ 0.52
USP39-201ENST00000323701 KIAA0754O94854 1291 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 SRPRAP08240 638 aaKnown RBP18.31■□□□□ 0.52
USP39-201ENST00000323701 C1SP09871 688 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 CD1DP15813 335 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 TFEBP19484 476 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 GJA4P35212 333 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 NNMTP40261 264 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 TTC31Q49AM3 519 aaPredicted RBP18.31■□□□□ 0.52
USP39-201ENST00000323701 ATAT1Q5SQI0 421 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 AGAP9Q5VTM2 703 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 GRAMD4Q6IC98 578 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 USP45Q70EL2 814 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 RPS27LQ71UM5 84 aaKnown RBP18.31■□□□□ 0.52
USP39-201ENST00000323701 CRLF3Q8IUI8 442 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 CLDN19Q8N6F1 224 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 RDH11Q8TC12 318 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 MYLK2Q9H1R3 596 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 P2RY12Q9H244 342 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 KDM4CQ9H3R0 1056 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 POMKQ9H5K3 350 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 ASB8Q9H765 288 aa18.31■□□□□ 0.52
USP39-201ENST00000323701 CORO1CQ9ULV4 474 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms