RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ELOVL6Q9H5J4 265 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 RAP2CQ9Y3L5 183 aa11.55□□□□□ -0.56
VPS4A-201ENST00000254950 IGLV3-10A0A075B6K4 115 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 H3BNC9 293 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 FCHO1O14526 889 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MAP3K7O43318 606 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 NSG1P42857 185 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SLC18A1P54219 525 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 HTRA4P83105 476 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 C1orf146Q5VVC0 180 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 RD3Q7Z3Z2 195 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TTC30BQ8N4P2 665 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CEP70Q8NHQ1 597 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ASZ1Q8WWH4 475 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 RSRC1Q96IZ7 334 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 GPR22Q99680 433 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TRMOQ9BU70 441 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CD84Q9UIB8 345 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 BAG5Q9UL15 447 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 AIM2O14862 343 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 GSTA4O15217 222 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CLDN7O95471 211 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MT-CO1P00395 513 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ENO3P13929 434 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 GKP32189 559 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MAGEA9P43362 315 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CPA2P48052 419 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 COPAP53621 1224 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TXNDC11Q6PKC3 985 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MILR1Q7Z6M3 343 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 PHYKPLQ8IUZ5 450 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 RAVER1Q8IY67 606 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 GIMAP7Q8NHV1 300 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MAGEC3Q8TD91 643 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 FGF13Q92913 245 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CLP1Q92989 425 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 FCRL3Q96P31 734 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 RANBP9Q96S59 729 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 NUF2Q9BZD4 464 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CEP44Q9C0F1 390 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 VCX3BQ9H321 246 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 KDM4CQ9H3R0 1056 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 PHPT1Q9NRX4 125 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SHOX2O60902 331 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TULP3O75386 442 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SERPIND1P05546 499 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF30P17039 623 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TARSP26639 723 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SERPINB3P29508 390 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 WDR4P57081 412 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TRAF2Q12933 501 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 STX5Q13190 355 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 RUNX3Q13761 415 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 C6orf10Q5SRN2 563 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MMAAQ8IVH4 418 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 OR14C36Q8NHC7 312 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 PIP4K2CQ8TBX8 421 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ATL1Q8WXF7 558 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ABHD8Q96I13 439 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CDH19Q9H159 772 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 NMRK1Q9NWW6 199 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MRPS17Q9Y2R5 130 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 PSAT1Q9Y617 370 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SOBPA7XYQ1 873 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 THRAP10827 490 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 VIPR1P32241 457 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 NEK3P51956 506 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 ACAP2Q15057 778 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 NR6A1Q15406 480 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 CYTH1Q15438 398 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MANEALQ5VSG8 457 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TRIM68Q6AZZ1 485 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 TIFABQ6ZNK6 161 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 FAM124AQ86V42 546 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 HIPK4Q8NE63 616 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 LRIG1Q96JA1 1093 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 MAGEE1Q9HCI5 957 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 SEMA4BQ9NPR2 832 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 PCDHGB4Q9UN71 923 aa11.54□□□□□ -0.56
VPS4A-201ENST00000254950 EIF3LQ9Y262 564 aaKnown RBP11.54□□□□□ -0.56
VPS4A-201ENST00000254950 WNT9AO14904 365 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CHUKO15111 745 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UBDO15205 165 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 HDAC3O15379 428 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 MLYCDO95822 493 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 DDX5P17844 614 aaKnown RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UGT1A6P19224 532 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UGT1A1P22309 533 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UGT1A4P22310 534 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ITGB8P26012 769 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UGT1A3P35503 534 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 UGT1A5P35504 534 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 TIE1P35590 1138 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 SLC18A2Q05940 514 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 ZNF460Q14592 562 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 CCDC85BQ15834 202 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 C9orf50Q5SZB4 431 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 KDELC1Q6UW63 502 aa11.53□□□□□ -0.56
VPS4A-201ENST00000254950 FSTL5Q8N475 847 aaPredicted RBP11.53□□□□□ -0.56
VPS4A-201ENST00000254950 N4BP2L2Q92802 583 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms