RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TFAP2CQ92754 450 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 C8orf48Q96LL4 319 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 TUBB1Q9H4B7 451 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 SDR39U1Q9NRG7 319 aaPredicted RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 SLC8A2Q9UPR5 921 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 UBA6A0AVT1 1052 aaPredicted RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 VPS4BO75351 444 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 CELF2O95319 508 aaKnown RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 HMBSP08397 361 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 ALDH3B2P48448 385 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 STC1P52823 247 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 TUBA4AP68366 448 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 LCP2Q13094 533 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 LPIN1Q14693 890 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 TRIP4Q15650 581 aaPredicted RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 INTS11Q5TA45 600 aaKnown RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 FBXO39Q8N4B4 442 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 CBR4Q8N4T8 237 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 FIBCD1Q8N539 461 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 STAG3L4Q8TBR4 150 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 LRRC58Q96CX6 371 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 FUBP3Q96I24 572 aaKnown RBP eCLIP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 SYTL2Q9HCH5 934 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 ACTR3BQ9P1U1 418 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 FXYD1O00168 92 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 PLOD2O00469 737 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 KERAO60938 352 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 RHOBTB1O94844 696 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 SLC6A2P23975 617 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 FASP25445 335 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 ACVRL1P37023 503 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 CLCQ05315 142 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 LCN8Q6JVE9 175 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 LPCAT2Q7L5N7 544 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 GOLM1Q8NBJ4 401 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 TRPV1Q8NER1 839 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 SPC25Q9HBM1 224 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 CMTM6Q9NX76 183 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 TRPM7Q96QT4 1865 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 MUSKO15146 869 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 TPST1O60507 370 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 EPOP01588 193 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 FOXM1Q08050 763 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 COQ5Q5HYK3 327 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 MFSD2AQ8NA29 543 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 FAM81AQ8TBF8 368 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 GRIN3AQ8TCU5 1115 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 GPR152Q8TDT2 470 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 FBXO32Q969P5 355 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 KIAA1191Q96A73 305 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 TMIGD2Q96BF3 282 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 CCDC68Q9H2F9 335 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 SEMA4BQ9NPR2 832 aaPredicted RBP18.65■□□□□ 0.58
CPSF3-201ENST00000238112 AGPAT4Q9NRZ5 378 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 MARCH2Q9P0N8 246 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 PHF24Q9UPV7 400 aa18.65■□□□□ 0.58
CPSF3-201ENST00000238112 RNF103-CHMP3A0A140T963 221 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 FAM149AA5PLN7 773 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 SERPINF2P08697 491 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 CHRM3P20309 590 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 CDK9P50750 372 aaKnown RBP18.64■□□□□ 0.57
CPSF3-201ENST00000238112 YBEYP58557 167 aaPredicted RBP18.64■□□□□ 0.57
CPSF3-201ENST00000238112 C10orf120Q5SQS8 335 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 BLOC1S3Q6QNY0 202 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 SLC45A3Q96JT2 553 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 C9orf16Q9BUW7 83 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 INTS10Q9NVR2 710 aaKnown RBP18.64■□□□□ 0.57
CPSF3-201ENST00000238112 TAS2R13Q9NYV9 303 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 FAM50BQ9Y247 325 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 SCN10AQ9Y5Y9 1956 aa18.64■□□□□ 0.57
CPSF3-201ENST00000238112 SLC12A8A0AV02 714 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 DRGXA6NNA5 263 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 ARPC2O15144 300 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 PRAMEF11O60813 436 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 OAZ2O95190 189 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 RAD51Q06609 339 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 BTG3Q14201 252 aaPredicted RBP18.63■□□□□ 0.57
CPSF3-201ENST00000238112 TYSND1Q2T9J0 566 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 SPATS1Q496A3 300 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 ANKS6Q68DC2 871 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 CYP2S1Q96SQ9 504 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 TRIM54Q9BYV2 358 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 DERL2Q9GZP9 239 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 OLA1Q9NTK5 396 aaKnown RBP18.63■□□□□ 0.57
CPSF3-201ENST00000238112 PCDHB5Q9Y5E4 795 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 BMP10O95393 424 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 IGHA2P01877 340 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 UGT1A6P19224 532 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 FMO4P31512 558 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 MAPKAPK2P49137 400 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 KCNK10P57789 538 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 NFYCQ13952 458 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 TTC33Q6PID6 262 aaPredicted RBP18.63■□□□□ 0.57
CPSF3-201ENST00000238112 PAQR3Q6TCH7 311 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 SPATA19Q7Z5L4 167 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 ZNF280BQ86YH2 543 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 ERI1Q8IV48 349 aaKnown RBP18.63■□□□□ 0.57
CPSF3-201ENST00000238112 ZNF786Q8N393 782 aa18.63■□□□□ 0.57
CPSF3-201ENST00000238112 DRAXINQ8NBI3 349 aaPredicted RBP18.63■□□□□ 0.57
CPSF3-201ENST00000238112 TNIP2Q8NFZ5 429 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms