RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	INSM1	Q01101	510 aa	Predicted RBP	14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CDK18	Q07002	472 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	XRCC4	Q13426	336 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	NR0B2	Q15466	257 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	TCEA2	Q15560	299 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	PCSK7	Q16549	785 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CDKN3	Q16667	212 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	ADAMTSL4	Q6UY14	1074 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	KDELC2	Q7Z4H8	507 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	NRSN1	Q8IZ57	195 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	UBL4B	Q8N7F7	174 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	SPATA22	Q8NHS9	363 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	IFI44	Q8TCB0	444 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CCHCR1	Q8TD31	782 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	HTR3C	Q8WXA8	447 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	ALG3	Q92685	438 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	SCAMP4	Q969E2	229 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	HERPUD2	Q9BSE4	406 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CYP4F12	Q9HCS2	524 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	KLHL8	Q9P2G9	620 aa	Predicted RBP	14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	MOSPD1	Q9UJG1	213 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CELSR3	Q9NYQ7	3312 aa		14.99	□□□□□ -0.01
PHGDH-231	ENST00000641939	CPED1	A4D0V7	1026 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	EME2	A4GXA9	379 aa	Predicted RBP	14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	MIF4GD	A9UHW6	222 aa	Known RBP	14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939		H7C0C1	242 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	PMPCB	O75439	489 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	SOD1	P00441	154 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	CEACAM5	P06731	702 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	PYGM	P11217	842 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	ATP5O	P48047	213 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	CAMK2B	Q13554	666 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	NOMO1	Q15155	1222 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	CCDC70	Q6NSX1	233 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	GUSBP11	Q6P575	273 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	SLC35F3	Q8IY50	421 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	ZNF567	Q8N184	647 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	CACTIN-AS1	Q8N1I8	211 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	ACTL9	Q8TC94	416 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	ZCCHC14	Q8WYQ9	949 aa	Known RBP	14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	RIOK2	Q9BVS4	552 aa	Known RBP	14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	FRMD8	Q9BZ67	464 aa	Predicted RBP	14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	TMEM168	Q9H0V1	697 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	UBP1	Q9NZI7	540 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	PKD2L2	Q9NZM6	624 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	TRHDE	Q9UKU6	1024 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	GPR34	Q9UPC5	381 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	PKD1L2	Q7Z442	2459 aa		14.98	□□□□□ -0.01
PHGDH-231	ENST00000641939	RGSL1	A5PLK6	1076 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ARHGAP6	O43182	974 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	OPA1	O60313	960 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	TJP3	O95049	919 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	NDST3	O95803	873 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	FTCD	O95954	541 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	NFKB1	P19838	968 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	SPINT3	P49223	89 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	OTUD4	Q01804	1114 aa	Known RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	TARDBP	Q13148	414 aa	Known RBP eCLIP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	AADACL2	Q6P093	401 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	PID1	Q7Z2X4	250 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	EFL1	Q7Z2Z2	1120 aa	Known RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	LYSMD3	Q7Z3D4	306 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	TAF8	Q7Z7C8	310 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	RNF10	Q8N5U6	811 aa	Known RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	PDCD7	Q8N8D1	485 aa	Known RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ARL10	Q8N8L6	244 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	MAPK15	Q8TD08	544 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	NAT6	Q93015	286 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	FCRL5	Q96RD9	977 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	FERMT1	Q9BQL6	677 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	TSGA10	Q9BZW7	698 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ABCG4	Q9H172	646 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	CARS2	Q9HA77	564 aa	Known RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ZFYVE1	Q9HBF4	777 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	MAGEE1	Q9HCI5	957 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	GULP1	Q9UBP9	304 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	FAM153A	Q9UHL3	310 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	PACSIN2	Q9UNF0	486 aa	Predicted RBP	14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	CLCA2	Q9UQC9	943 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	SLC17A4	Q9Y2C5	497 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ADGRG1	Q9Y653	693 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	ZZEF1	O43149	2961 aa		14.97	□□□□□ -0.01
PHGDH-231	ENST00000641939	URB1	O60287	2271 aa	Known RBP	14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	TRABD2B	A6NFA1	517 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	MT-CO3	P00414	261 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	FUCA1	P04066	466 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	CAPNS1	P04632	268 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	PIRT	P0C851	137 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	RBL1	P28749	1068 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	TNNT3	P45378	269 aa	Predicted RBP	14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	EIF3E	P60228	445 aa	Known RBP	14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	HENMT1	Q5T8I9	393 aa	Known RBP	14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	KDELC1	Q6UW63	502 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	CDKL3	Q8IVW4	592 aa	Predicted RBP	14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	DCBLD1	Q8N8Z6	715 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	KY	Q8NBH2	561 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	CCDC112	Q8NEF3	446 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	HIC2	Q96JB3	615 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	WDR24	Q96S15	920 aa		14.96	□□□□□ -0.01
PHGDH-231	ENST00000641939	SRPK1	Q96SB4	655 aa	Known RBP	14.96	□□□□□ -0.01

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms