RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CCM2Q9BSQ5 444 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 HGH1Q9BTY7 390 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GPAMQ9HCL2 828 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MUTYHQ9UIF7 546 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SIK3Q9Y2K2 1263 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TNPO3Q9Y5L0 923 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TRIP11Q15643 1979 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ERI2A8K979 691 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 B2RBV5 119 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SCAMP1O15126 338 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MDM4O15151 490 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 KLK10O43240 276 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PEX1O43933 1283 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MAP3K6O95382 1288 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TAB1Q15750 504 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GPSM1Q86YR5 675 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FAM20CQ8IXL6 584 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FAM126BQ8IXS8 530 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ZADH2Q8N4Q0 377 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF398Q8TD17 642 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ANKRD49Q8WVL7 239 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CLP1Q92989 425 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PMEPA1Q969W9 287 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 HMCESQ96FZ2 354 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CNDP2Q96KP4 475 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PPP1R36Q96LQ0 422 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GAREM1Q9H706 876 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SMCO3A2RU48 225 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TRIM13O60858 407 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 HLA-DQA2P01906 255 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TMED10P49755 219 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CASP9P55211 416 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TMED1Q13445 227 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TRAF7Q6Q0C0 670 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ADCK1Q86TW2 530 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CAMKVQ8NCB2 501 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FAM45AQ8TCE6 357 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 C1orf54Q8WWF1 131 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 POP5Q969H6 163 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GTPBP3Q969Y2 492 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 LRRC39Q96DD0 335 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CCNL2Q96S94 520 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TBC1D23Q9NUY8 699 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FBXO2Q9UK22 296 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 NUMBLQ9Y6R0 609 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MYH7BA7E2Y1 1941 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MYH13Q9UKX3 1938 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TRIP12Q14669 1992 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CENPXA8MT69 81 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF623O75123 536 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 LYPLA2O95372 231 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 BAG2O95816 211 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PAK4O96013 591 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ALDOAP04075 364 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 HCAR3P49019 387 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GALCP54803 685 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 RPS3AP61247 264 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 VAC14Q08AM6 782 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MAD2L1Q13257 205 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FAM71DQ8N9W8 422 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 JPH3Q8WXH2 748 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CLEC4DQ8WXI8 215 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ZFYVE19Q96K21 471 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PBX4Q9BYU1 374 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SUV39H2Q9H5I1 410 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 DNAAF2Q9NVR5 837 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GPATCH2LQ9NWQ4 482 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 KMOO15229 486 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SLURP2P0DP57 97 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PRKAR1AP10644 381 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CD151P48509 253 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 UCNP55089 124 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 POU5F1Q01860 360 aaKnown RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ADCY2Q08462 1091 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 MYBPHQ13203 477 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF211Q13398 564 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CASP8Q14790 479 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 KLHL12Q53G59 568 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FAM180AQ6UWF9 173 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 CCDC80Q76M96 950 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 FGD2Q7Z6J4 655 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 SAMD14Q8IZD0 417 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-218ENST00000640036 DNASE1L2Q92874 299 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 LRIG1Q96JA1 1093 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 GOLPH3LQ9H4A5 285 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 PTGES2Q9H7Z7 377 aa5.01□□□□□ -1.61
SCN1A-218ENST00000640036 TP53I11O14683 189 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GZMAP12544 262 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 RRM2P31350 389 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF132P52740 706 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TRPM8Q7Z2W7 1104 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 DENND6AQ8IWF6 608 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ADHFE1Q8IWW8 467 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TMEM161BQ8NDZ6 487 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 OR2T34Q8NGX1 318 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 RADILQ96JH8 1075 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ZIC5Q96T25 663 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TBL1YQ9BQ87 522 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PACSIN3Q9UKS6 424 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 203.1 ms