RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZNF549Q6P9A3 640 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 KIAA0408Q6ZU52 694 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 PLD6Q8N2A8 252 aaKnown RBP20.05■□□□□ 0.8
CLN3-250ENST00000636839 APOPT1Q96IL0 206 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 LRIG1Q96JA1 1093 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 SRPK1Q96SB4 655 aaKnown RBP20.05■□□□□ 0.8
CLN3-250ENST00000636839 OMDQ99983 421 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 VPS11Q9H270 941 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 COL4A2P08572 1712 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 SPINT1O43278 529 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 PMLP29590 882 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 HADHAP40939 763 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 CCNFP41002 786 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 TNFRSF4P43489 277 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 PSMD8P48556 350 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 STC1P52823 247 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 ENPP2Q13822 863 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 USP10Q14694 798 aaKnown RBP20.05■□□□□ 0.8
CLN3-250ENST00000636839 PREPLQ4J6C6 727 aaPredicted RBP20.05■□□□□ 0.8
CLN3-250ENST00000636839 MRNIPQ6NTE8 343 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 HSD11B1LQ7Z5J1 315 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 TMIEQ8NEW7 156 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 PBXIP1Q96AQ6 731 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 FAM136AQ96C01 138 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 ELMO2Q96JJ3 720 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 OLFM1Q99784 485 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 DKK3Q9UBP4 350 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 H7C0S8 307 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 COPEO14579 308 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 MAGEA12P43365 314 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 TAS2R39P59534 338 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 RALGDSQ12967 914 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 CHRNA6Q15825 494 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 TMEM196Q5HYL7 178 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 C16orf46Q6P387 395 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 NUDT18Q6ZVK8 323 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 TAS2R42Q7RTR8 314 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 RALGPS2Q86X27 583 aaPredicted RBP20.04■□□□□ 0.8
CLN3-250ENST00000636839 ABCG8Q9H221 673 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 TRPV5Q9NQA5 729 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 NKIRAS1Q9NYS0 192 aa20.04■□□□□ 0.8
CLN3-250ENST00000636839 SMG5Q9UPR3 1016 aaKnown RBP20.04■□□□□ 0.8
CLN3-250ENST00000636839 ADAM23O75077 832 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 SRP72O76094 671 aaKnown RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 PRAMEF1O95521 474 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 C2P06681 752 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 CDKN2DP55273 166 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 DNAJC3Q13217 504 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 SPATA6LQ8N4H0 392 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 ISL2Q96A47 359 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 FAM111AQ96PZ2 611 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 WRAP53Q9BUR4 548 aaKnown RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 SLC6A17Q9H1V8 727 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 SSU72Q9NP77 194 aaKnown RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 SUN2Q9UH99 717 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 A0A096LPK6 155 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 XPAP23025 273 aaPredicted RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 VIPR1P32241 457 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 SERPINB8P50452 374 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 CSRP3P50461 194 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 TYSND1Q2T9J0 566 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 LVRNQ6Q4G3 990 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 SDCCAG8Q86SQ7 713 aaPredicted RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 TAX1BP1Q86VP1 789 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 IL17RCQ8NAC3 791 aa20.03■□□□□ 0.8
CLN3-250ENST00000636839 ALKBH8Q96BT7 664 aaKnown RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 UNKQ9C0B0 810 aaKnown RBP20.03■□□□□ 0.8
CLN3-250ENST00000636839 A0A1W2PQ67 120 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 WDR91A4D1P6 747 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 ASMTLO95671 621 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 ITGB7P26010 798 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 FMO4P31512 558 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 LSP1P33241 339 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 ETV3P41162 512 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 SEC24CP53992 1094 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 IRX4P78413 519 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 TIAL1Q01085 375 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN3-250ENST00000636839 GLIPR1L2Q4G1C9 344 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 Q6ZVL8 140 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 PIM3Q86V86 326 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 SCAMP4Q969E2 229 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 SCN8AQ9UQD0 1980 aa20.02■□□□□ 0.8
CLN3-250ENST00000636839 GLYATL1P3A0A0U1RQE8 302 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 UBA6A0AVT1 1052 aaPredicted RBP20.02■□□□□ 0.79
CLN3-250ENST00000636839 SHOX2O60902 331 aaPredicted RBP20.02■□□□□ 0.79
CLN3-250ENST00000636839 SLC35E2BP0CK96 405 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 VCANP13611 3396 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 OGNP20774 298 aaKnown RBP20.02■□□□□ 0.79
CLN3-250ENST00000636839 MMP12P39900 470 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 SPINT3P49223 89 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 ARHGEF7Q14155 803 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 HABP4Q5JVS0 413 aaKnown RBP20.02■□□□□ 0.79
CLN3-250ENST00000636839 HECTD2Q5U5R9 776 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 FBXL19Q6PCT2 694 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 RAPH1Q70E73 1250 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 LPGAT1Q92604 370 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 SGSM3Q96HU1 749 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 ASB8Q9H765 288 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 EMCNQ9ULC0 261 aa20.02■□□□□ 0.79
CLN3-250ENST00000636839 PLLPQ9Y342 182 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms