RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 R3HCC1LQ7Z5L2 792 aaKnown RBP11.02□□□□□ -0.64
CLN3-244ENST00000636147 PIM3Q86V86 326 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 SH3GL1Q99961 368 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 PRKD2Q9BZL6 878 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 FZD8Q9H461 694 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 SMURF2Q9HAU4 748 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 GLOD4Q9HC38 313 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 USE1Q9NZ43 259 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 MTRRQ9UBK8 725 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 CPA4Q9UI42 421 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 NOD1Q9Y239 953 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 INVSQ9Y283 1065 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 TPRKBQ9Y3C4 175 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 GLI3P10071 1580 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 AQP12BA6NM10 295 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 YJEFN3A6XGL0 299 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 IDH3BO43837 385 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 B3GAT3O94766 335 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 ALDH1A2O94788 518 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 DIO3P55073 304 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 ZNF484Q5JVG2 852 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 STEAP4Q687X5 459 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 BORAQ6PGQ7 559 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 AQP12AQ8IXF9 295 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 RTP4Q96DX8 246 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 SPATA17Q96L03 361 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 TEKT5Q96M29 485 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 DEPDC7Q96QD5 511 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 AMBNQ9NP70 447 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 CD320Q9NPF0 282 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 ADGRE2Q9UHX3 823 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 AP1G1O43747 822 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 RECQL5O94762 991 aaPredicted RBP11.02□□□□□ -0.65
CLN3-244ENST00000636147 ENDOD1O94919 500 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 ANXA6P08133 673 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 IDO1P14902 403 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 BDNFP23560 247 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 GLUD2P49448 558 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 COPZ1P61923 177 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 DCAF4L1Q3SXM0 396 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 SLC22A16Q86VW1 577 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 UTP15Q8TED0 518 aaKnown RBP11.02□□□□□ -0.65
CLN3-244ENST00000636147 TBATAQ96M53 351 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 COLEC11Q9BWP8 271 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 ANKRD60Q9BZ19 345 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 PTBP2Q9UKA9 531 aaKnown RBP11.02□□□□□ -0.65
CLN3-244ENST00000636147 PCDHGA4Q9Y5G9 962 aa11.02□□□□□ -0.65
CLN3-244ENST00000636147 TTC24A2A3L6 582 aaPredicted RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 CASTOR2A6NHX0 329 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 DPYSL4O14531 572 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 NDUFS2O75306 463 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CCNKO75909 580 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 PGK1P00558 417 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 IST1P53990 364 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CELF3Q5SZQ8 465 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 ARMC4Q5T2S8 1044 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SLC15A3Q8IY34 581 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CLHC1Q8NHS4 586 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 S100ZQ8WXG8 99 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TMBIM1Q969X1 311 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 ROPN1LQ96C74 230 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 RPRD1AQ96P16 312 aaPredicted RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 GPR20Q99678 358 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 DPY30Q9C005 99 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SPON1Q9HCB6 807 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SPATA7Q9P0W8 599 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CACNG4Q9UBN1 327 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CDH9Q9ULB4 789 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 DDX60LQ5H9U9 1706 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 PRRC2BQ5JSZ5 2229 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 LRRC14BA6NHZ5 514 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TNPO2O14787 897 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 ARHGEF9O43307 516 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 MED26O95402 600 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 ANGPTL1O95841 491 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 FUCA1P04066 466 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 DPEP1P16444 411 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 POU1F1P28069 291 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 PNPLA4P41247 253 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 IDH2P48735 452 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 LAPTM4AQ15012 233 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 PSMD5Q16401 504 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TAZQ16635 292 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SYT16Q17RD7 645 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SLC27A1Q6PCB7 646 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 Q6ZNX1 250 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CATSPERGQ6ZRH7 1159 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TFAP2CQ92754 450 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 MTFMTQ96DP5 389 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 SYTL2Q9HCH5 934 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 CCM2LQ9NUG4 571 aaPredicted RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 GMPPBQ9Y5P6 360 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 KIAA1551Q9HCM1 1747 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TYW5A2RUC4 315 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 BBIP1A8MTZ0 92 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 EVPLLA8MZ36 301 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 NME4O00746 187 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 AURKAO14965 403 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 OXSR1O95747 527 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms