RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TMC3Q7Z5M5 1100 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 HEATR4Q86WZ0 1026 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 HID1Q8IV36 788 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 PELI3Q8N2H9 469 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 SLC35F6Q8N357 371 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 OR56A4Q8NGH8 313 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 SCAMP4Q969E2 229 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 TBATAQ96M53 351 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 HOMER3Q9NSC5 361 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 UCKL1Q9NWZ5 548 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 KNTC1P50748 2209 aa20.64■□□□□ 0.89
CLN3-240ENST00000631023 ZFC3H1O60293 1989 aaKnown RBP20.64■□□□□ 0.89
CLN3-240ENST00000631023 SCAMP1O15126 338 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 AQP9O43315 295 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 LDOC1O95751 146 aaPredicted RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 TNFP01375 233 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 CTSEP14091 401 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 HK3P52790 923 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 CDK3Q00526 305 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 SNX1Q13596 522 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 ADAMTSL4Q6UY14 1074 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 ZNF548Q8NEK5 533 aaPredicted RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 TSACCQ96A04 125 aaPredicted RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 RTP4Q96DX8 246 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 GORASP1Q9BQQ3 440 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 FICDQ9BVA6 458 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 DUSP23Q9BVJ7 150 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 RIOK2Q9BVS4 552 aaKnown RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 LGR4Q9BXB1 951 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 TMEM202A6NGA9 273 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 PSMD3O43242 534 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 AGTP01019 485 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 SLC4A1P02730 911 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 CHRNA4P43681 627 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 GDF10P55107 478 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 ALG11Q2TAA5 492 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 PRRT3Q5FWE3 981 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 DRICH1Q6PGQ1 229 aaPredicted RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 RANBP10Q6VN20 620 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 RD3Q7Z3Z2 195 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 OR4C6Q8NH72 309 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 LMX1AQ8TE12 382 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 NLGN3Q9NZ94 848 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 APOBEC2Q9Y235 224 aaKnown RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 DRG1Q9Y295 367 aaKnown RBP20.63■□□□□ 0.89
CLN3-240ENST00000631023 DGKBQ9Y6T7 804 aa20.63■□□□□ 0.89
CLN3-240ENST00000631023 FFAR2O15552 330 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 IFNB1P01574 187 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 ADRA1AP35348 466 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 HMGCLP35914 325 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 ELOCQ15369 112 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 SIX1Q15475 284 aaPredicted RBP20.62■□□□□ 0.89
CLN3-240ENST00000631023 RBFAQ8N0V3 343 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 SDR16C5Q8N3Y7 309 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 FSTL5Q8N475 847 aaPredicted RBP20.62■□□□□ 0.89
CLN3-240ENST00000631023 CCDC89Q8N998 374 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 EID2BQ96D98 161 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 CNDP2Q96KP4 475 aaKnown RBP20.62■□□□□ 0.89
CLN3-240ENST00000631023 NAP1L3Q99457 506 aaPredicted RBP20.62■□□□□ 0.89
CLN3-240ENST00000631023 MOSPD1Q9UJG1 213 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 PNMA8BQ9ULN7 279 aaPredicted RBP20.62■□□□□ 0.89
CLN3-240ENST00000631023 SPO11Q9Y5K1 396 aa20.62■□□□□ 0.89
CLN3-240ENST00000631023 ADRB1P08588 477 aa20.61■□□□□ 0.89
CLN3-240ENST00000631023 DCDC1P59894 354 aa20.61■□□□□ 0.89
CLN3-240ENST00000631023 HENMT1Q5T8I9 393 aaKnown RBP20.61■□□□□ 0.89
CLN3-240ENST00000631023 BLOC1S5Q8TDH9 187 aa20.61■□□□□ 0.89
CLN3-240ENST00000631023 HIC2Q96JB3 615 aa20.61■□□□□ 0.89
CLN3-240ENST00000631023 TCEAL2Q9H3H9 227 aaPredicted RBP20.61■□□□□ 0.89
CLN3-240ENST00000631023 FGF22Q9HCT0 170 aa20.61■□□□□ 0.89
CLN3-240ENST00000631023 FEZ2Q9UHY8 353 aaPredicted RBP20.61■□□□□ 0.89
CLN3-240ENST00000631023 TPP1O14773 563 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 SIGLEC6O43699 453 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 TRIM16O95361 564 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 METTL18O95568 372 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 SOD1P00441 154 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 ZDHHC20Q5W0Z9 365 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 GLT6D1Q7Z4J2 308 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 KLHDC8BQ8IXV7 354 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 RASGEF1CQ8N431 466 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 OR1E3Q8WZA6 343 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 TBL1YQ9BQ87 522 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 ZSCAN5AQ9BUG6 496 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 LRRC61Q9BV99 259 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 SPATA16Q9BXB7 569 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 LRRC40Q9H9A6 602 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 CYP4F12Q9HCS2 524 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-240ENST00000631023 NFKBIL1Q9UBC1 381 aaPredicted RBP20.6■□□□□ 0.89
CLN3-240ENST00000631023 PYCARDQ9ULZ3 195 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 DOLKQ9UPQ8 538 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 NCOR2Q9Y618 2525 aa20.6■□□□□ 0.89
CLN3-240ENST00000631023 MED19A0JLT2 244 aaPredicted RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 PRSS38A1L453 326 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 LMO7DNF2Z398 122 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 TRIM38O00635 465 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 AURKAO14965 403 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 ATP1A1P05023 1023 aaKnown RBP20.59■□□□□ 0.89
CLN3-240ENST00000631023 ANXA6P08133 673 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 FTH1P19P0C7X4 201 aa20.59■□□□□ 0.89
CLN3-240ENST00000631023 FDFT1P37268 417 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms