RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 SNAP23O00161 211 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 STX6O43752 255 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 PFKFB2O60825 505 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 MBD3O95983 291 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 MMP3P08254 477 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 HAND2P61296 217 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 EEF1A2Q05639 463 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 KIF19Q2TAC6 998 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 CLEC17AQ6ZS10 378 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 PALB2Q86YC2 1186 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 TMTC2Q8N394 836 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 FBXL16Q8N461 479 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 MIGA1Q8NAN2 632 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 TDRD7Q8NHU6 1098 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 ESR2Q92731 530 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 GTF3C6Q969F1 213 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 NSUN4Q96CB9 384 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 FIZ1Q96SL8 496 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 SLC25A33Q9BSK2 321 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 UBAC1Q9BSL1 405 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 CD209Q9NNX6 404 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 GRHL1Q9NZI5 618 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 MDFICQ9P1T7 246 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 AGO1Q9UL18 857 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 MROH7-TTC4A0A0A0MT08 1334 aa5.2□□□□□ -1.58
VPS29-212ENST00000621131 BRCA1P38398 1863 aaKnown RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 COL1A1P02452 1464 aaPredicted RBP5.2□□□□□ -1.58
VPS29-212ENST00000621131 UNC80Q8N2C7 3258 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 KLF18A0A0U1RQI7 1052 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 CCDC196A0A1B0GTZ2 297 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 IFIT3O14879 490 aaKnown RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 ITM2AO43736 263 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 KCNJ13O60928 360 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 BAG4O95429 457 aaKnown RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 TFRCP02786 760 aaKnown RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 PNPLA4P41247 253 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 SKIV2L2P42285 1042 aaKnown RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 MTNR1AP48039 350 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 MECOMQ03112 1051 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 TRIM29Q14134 588 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 WTAPQ15007 396 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 ME3Q16798 604 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 LCE1EQ5T753 118 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 H1FNTQ75WM6 255 aaPredicted RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 IQCA1Q86XH1 822 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 TMC8Q8IU68 726 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 MB21D2Q8IYB1 491 aaPredicted RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 OR6Y1Q8NGX8 325 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 TBC1D16Q8TBP0 767 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 TMEM18Q96B42 140 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 KTI12Q96EK9 354 aaPredicted RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 TCEANC2Q96MN5 208 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 TAF1DQ9H5J8 278 aaPredicted RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 G6PC2Q9NQR9 355 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 OCIAD1Q9NX40 245 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 AATFQ9NY61 560 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS29-212ENST00000621131 KCNG2Q9UJ96 466 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 DDX49Q9Y6V7 483 aaKnown RBP5.19□□□□□ -1.58
VPS29-212ENST00000621131 LTBP1Q14766 1721 aa5.19□□□□□ -1.58
VPS29-212ENST00000621131 ARFGEF1Q9Y6D6 1849 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CNTNAP1P78357 1384 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CEP290O15078 2479 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 DENND3A2RUS2 1198 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 GOLGA6L4A6NEF3 574 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 FAM157AC9JC47 383 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 ZBTB43O43298 467 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 KIF1CO43896 1103 aaKnown RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 LDB3O75112 727 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 DDNO94850 711 aaPredicted RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 ZNF432O94892 652 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 IGKV3-20P01619 116 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CSF1P09603 554 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CALM1P0DP23 149 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CALM2P0DP24 149 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CALM3P0DP25 149 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 HSPA8P11142 646 aaKnown RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 XBP1P17861 261 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 SYT1P21579 422 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CST5P28325 142 aaPredicted RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 LIFRP42702 1097 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 METAP2P50579 478 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS29-212ENST00000621131 LBX1P52954 281 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 TUBA1BP68363 451 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 AKAP17AQ02040 695 aaKnown RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 THOC5Q13769 683 aaKnown RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 PPP2R5BQ15173 497 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 STOX1Q6ZVD7 989 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 TBC1D10CQ8IV04 446 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 NECAB1Q8N987 351 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 OR4N2Q8NGD1 307 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 CSGALNACT1Q8TDX6 532 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 SLC39A13Q96H72 371 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 DUX5Q96PT3 197 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 RIOK1Q9BRS2 568 aaKnown RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 MSTO1Q9BUK6 570 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 LRRC2Q9BYS8 371 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 AGXT2Q9BYV1 514 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 LHPPQ9H008 270 aa5.18□□□□□ -1.58
VPS29-212ENST00000621131 ZSCAN16Q9H4T2 348 aaPredicted RBP5.18□□□□□ -1.58
VPS29-212ENST00000621131 NLKQ9UBE8 527 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms