RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 UGT3A2Q3SY77 523 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 FAM45BPQ6NSW5 357 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 LARP4Q71RC2 724 aaKnown RBP eCLIP18.32■□□□□ 0.52
UPF1-210ENST00000600689 PTGR2Q8N8N7 351 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 FAM45AQ8TCE6 357 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 HPS1Q92902 700 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 PABPC5Q96DU9 382 aaKnown RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 TEX37Q96LM6 180 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 TSPYL2Q9H2G4 693 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 EPS8L2Q9H6S3 715 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 WDR6Q9NNW5 1121 aaKnown RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 SEMA4BQ9NPR2 832 aaPredicted RBP18.32■□□□□ 0.52
UPF1-210ENST00000600689 GTF2IRD1Q9UHL9 959 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 VPS51Q9UID3 782 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 TCAF1Q9Y4C2 921 aa18.32■□□□□ 0.52
UPF1-210ENST00000600689 KDM1AO60341 852 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 ZNF12P17014 697 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 NPR3P17342 541 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 LIPEQ05469 1076 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 MOGQ16653 247 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 CLEC20AQ6ZU45 233 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 UNC93AQ86WB7 457 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 HS3ST5Q8IZT8 346 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 MFSD2AQ8NA29 543 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TMEM40Q8WWA1 233 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 LRRC58Q96CX6 371 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 CCDC138Q96M89 665 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 CSF3RQ99062 836 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 SEZ6LQ9BYH1 1024 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TRIM15Q9C019 465 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 NDFIP2Q9NV92 336 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 RBM22Q9NW64 420 aaKnown RBP eCLIP18.31■□□□□ 0.52
UPF1-210ENST00000600689 NSMCE4AQ9NXX6 385 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 UBXN8O00124 270 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 GPR32O75388 356 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 PARNO95453 639 aaKnown RBP18.31■□□□□ 0.52
UPF1-210ENST00000600689 GSTT2P0CG29 244 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 GSTT2BP0CG30 244 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 GFAPP14136 432 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 MIER2Q8N344 545 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 ATPAF2Q8N5M1 289 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TRPV3Q8NET8 790 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 DUSP16Q9BY84 665 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 RMI1Q9H9A7 625 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TRHDEQ9UKU6 1024 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 FNDC3AQ9Y2H6 1198 aaKnown RBP18.31■□□□□ 0.52
UPF1-210ENST00000600689 KCTD3Q9Y597 815 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 RAD54BQ9Y620 910 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 ERI2A8K979 691 aaKnown RBP18.31■□□□□ 0.52
UPF1-210ENST00000600689 FXYD1O00168 92 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 NOBOXO60393 691 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 LDLRP01130 860 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 IDUAP35475 653 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 CDKN2DP55273 166 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 LAPTM5Q13571 262 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TIGD2Q4W5G0 525 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TMEM207Q6UWW9 146 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TWIST2Q8WVJ9 160 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 SLC35B4Q969S0 331 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 COLEC11Q9BWP8 271 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 ABHD16BQ9H3Z7 469 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 TUBA8Q9NY65 449 aaPredicted RBP18.31■□□□□ 0.52
UPF1-210ENST00000600689 CPA4Q9UI42 421 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 SARDHQ9UL12 918 aa18.31■□□□□ 0.52
UPF1-210ENST00000600689 KRBA1A5PL33 1030 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 HTR3EA5X5Y0 456 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 RASAL1O95294 804 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 PSMD8P48556 350 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 SPCS2Q15005 226 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 TMTC4Q5T4D3 741 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 INTS11Q5TA45 600 aaKnown RBP18.3■□□□□ 0.52
UPF1-210ENST00000600689 HECTD2Q5U5R9 776 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 FAM117BQ6P1L5 589 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 CHID1Q9BWS9 393 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 KLHL25Q9H0H3 589 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 ALG2Q9H553 416 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 TMEM30AQ9NV96 361 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 CDH7Q9ULB5 785 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 PIRTP0C851 137 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 SMIM10L2AP0DMW4 78 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 SMIM10L2BP0DMW5 78 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 CYP2C9P11712 490 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 KPNA2P52292 529 aaKnown RBP18.3■□□□□ 0.52
UPF1-210ENST00000600689 PAGE3Q5JUK9 113 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 DNAJB3Q8WWF6 145 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 SNX27Q96L92 541 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 MYRFLQ96LU7 910 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 SLC30A3Q99726 388 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 INTS7Q9NVH2 962 aaKnown RBP18.3■□□□□ 0.52
UPF1-210ENST00000600689 AASSQ9UDR5 926 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 ANAPC2Q9UJX6 822 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 WDR37Q9Y2I8 494 aa18.3■□□□□ 0.52
UPF1-210ENST00000600689 INHBBP09529 407 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 ARL13BQ3SXY8 428 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 UNC50Q53HI1 259 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 C6orf183Q5T699 404 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 SLC27A1Q6PCB7 646 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 PAQR9Q6ZVX9 377 aa18.29■□□□□ 0.52
UPF1-210ENST00000600689 ZNF467Q7Z7K2 595 aaPredicted RBP18.29■□□□□ 0.52
UPF1-210ENST00000600689 LINC00523Q86TU6 105 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms