RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SLC25A11Q02978 314 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 IQCB1Q15051 598 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 HADHQ16836 314 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 HGSNATQ68CP4 663 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 LRRC66Q68CR7 880 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 LUZP1Q86V48 1076 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 TEKT4Q8WW24 435 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 PIH1D2Q8WWB5 315 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 SCAMP4Q969E2 229 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 ABCG8Q9H221 673 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 KCTD5Q9NXV2 234 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 SEPT10Q9P0V9 454 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 CHKBQ9Y259 395 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 SSUH2Q9Y2M2 353 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 PCDHB11Q9Y5F2 797 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 A0A087X0T9 212 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 J3QKU1 62 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 NVLO15381 856 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 SERPING1P05155 500 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 FAM228BP0C875 321 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 LIPCP11150 499 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 UBASH3AP57075 661 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 ZNF761Q86XN6 746 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 SLITRK4Q8IW52 837 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 KCTD6Q8NC69 237 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 SNRNP27Q8WVK2 155 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 SGF29Q96ES7 293 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 MED8Q96G25 268 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 AGAP2Q99490 1192 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 CBX8Q9HC52 389 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 RBM22Q9NW64 420 aaKnown RBP eCLIP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 TRNAU1APQ9NX07 287 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 PRKAB1Q9Y478 270 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 ST14Q9Y5Y6 855 aa17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 BZW2Q9Y6E2 419 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-223ENST00000600552 CFAP46Q8IYW2 2715 aa17.52■□□□□ 0.39
SHKBP1-223ENST00000600552 COL6A6A6NMZ7 2263 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 SYCE3A1L190 88 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 C9orf172C9J069 976 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 PSMD11O00231 422 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 ZW10O43264 779 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 CYP1A2P05177 515 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 IL4RP24394 825 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 RALGPS1Q5JS13 557 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 FAM182AQ5T1J6 154 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 TMEM164Q5U3C3 297 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 TECPR1Q7Z6L1 1165 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 CBARPQ8N350 705 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 LPCAT1Q8NF37 534 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 EXTL1Q92935 676 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 TMEM159Q96B96 161 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 CCDC74BQ96LY2 380 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 OR2M4Q96R27 311 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 MCCC1Q96RQ3 725 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 RIOK2Q9BVS4 552 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 POLR1EQ9GZS1 481 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 CTTNBP2NLQ9P2B4 639 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 ZNHIT2Q9UHR6 403 aa17.51■□□□□ 0.39
SHKBP1-223ENST00000600552 B8ZZF3 427 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 PPM1DO15297 605 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC28A2O43868 658 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 IVLP07476 585 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 CD1CP29017 333 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 GARSP41250 739 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 CYP4F2P78329 520 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 PTSQ03393 145 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 DPYSL3Q14195 570 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 ANKRD20A8PQ5CZ79 823 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 FIGNQ5HY92 759 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 SNAP47Q5SQN1 464 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 ALKBH5Q6P6C2 394 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 ZNF574Q6ZN55 896 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 PRICKLE2Q7Z3G6 844 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 NAGSQ8N159 534 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 NIPA2Q8N8Q9 360 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 EXD3Q8N9H8 876 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 CCNYQ8ND76 341 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 ZNF564Q8TBZ8 553 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 CDH19Q9H159 772 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 KCNK4Q9NYG8 393 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 SLC17A4Q9Y2C5 497 aa17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 LUC7L2Q9Y383 392 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-223ENST00000600552 IGHV5-10-1A0A0J9YXX1 117 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 A0A0J9YYE9 177 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 A0A1W2PQJ5 194 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 CLDN7O95471 211 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 TRBC1P01850 177 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 ATP1A1P05023 1023 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 ZBED6P86452 979 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 DPTQ07507 201 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 GALNT2Q10471 571 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 NFATC3Q12968 1075 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 NCBP2-AS2Q69YL0 99 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 ADAMTSL4Q6UY14 1074 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 GALNT13Q8IUC8 556 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 TEX26Q8N6G2 289 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 ZSCAN1Q8NBB4 408 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 SPOCK2Q92563 424 aa17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 AHCYL2Q96HN2 611 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-223ENST00000600552 A8MU76 341 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms