RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TPP1O14773 563 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 TREHO43280 583 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ADRB2P07550 413 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ABHD2P08910 425 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 TAL1P17542 331 aaPredicted RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 TAS2R41P59536 307 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 GNA12Q03113 381 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 FAAP100Q0VG06 881 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ZCWPW2Q504Y3 356 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 CPTPQ5TA50 214 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 SIX5Q8N196 739 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 KIF2BQ8N4N8 673 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ATAD1Q8NBU5 361 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 PTCD3Q96EY7 689 aaKnown RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 AARSD1Q9BTE6 412 aaKnown RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 PIF1Q9H611 641 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 PCDHB3Q9Y5E6 796 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 SIN3BO75182 1162 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 KLK3P07288 261 aaPredicted RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 NT5EP21589 574 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 WASP42768 502 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 MBTD1Q05BQ5 628 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ADCY4Q8NFM4 1077 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 MIOSQ9NXC5 875 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 MARK1Q9P0L2 795 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 C3orf18Q9UK00 162 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 PSMD13Q9UNM6 376 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 UBE2QL1A1L167 161 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 H3BUI4 141 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 TLE2Q04725 743 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SPIRE1Q08AE8 756 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 WASHC2DQ5SRD0 308 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 LIX1Q8N485 282 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 HAPLN3Q96S86 360 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 CERS4Q9HA82 394 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 RASSF1Q9NS23 344 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 EFR3BQ9Y2G0 817 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SNRPB2P08579 225 aaKnown RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 COL6A2P12110 1019 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 LAMP2P13473 410 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 CCL5P13501 91 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 DGUOKQ16854 277 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SPANXN2Q5MJ10 180 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 VARS2Q5ST30 1063 aaKnown RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 C12orf42Q96LP6 360 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SLC9A7Q96T83 725 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SAR1AQ9NR31 198 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 CFL2Q9Y281 166 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 CCNCP24863 283 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 HID1Q8IV36 788 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 MDM1Q8TC05 714 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 C19orf25Q9UFG5 118 aaPredicted RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 CDH7Q9ULB5 785 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 IRAK3Q9Y616 596 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 AZIN1O14977 448 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 SSTR1P30872 391 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 PBX3P40426 434 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 FAM98AQ8NCA5 519 aaKnown RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 DNAJC18Q9H819 358 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 AGO3Q9H9G7 860 aaKnown RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 CMTM6Q9NX76 183 aa20.42■□□□□ 0.86
UPF1-207ENST00000599848 ZNF624Q9P2J8 865 aaPredicted RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 CRNNQ9UBG3 495 aaPredicted RBP20.42■□□□□ 0.86
UPF1-207ENST00000599848 SLC38A8A6NNN8 435 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 YDJCA8MPS7 323 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 RFXANKO14593 260 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 KERAO60938 352 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 ZNF132P52740 706 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 PPP1R26Q5T8A7 1209 aaPredicted RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 DUPD1Q68J44 220 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SNX32Q86XE0 403 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 NUDT4Q9NZJ9 180 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 WASHC1A8K0Z3 465 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 WASH3PC4AMC7 463 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 ATP6V1B1P15313 513 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 GOT1P17174 413 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 NOMO3P69849 1222 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 OASLQ15646 514 aaKnown RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 WASH2PQ6VEQ5 465 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 ENKURQ8TC29 256 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 HDAC10Q969S8 669 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 COMMD9Q9P000 198 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 HAO1Q9UJM8 370 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SCAMP3O14828 347 aaKnown RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 VEGFDO43915 354 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 KCNA5P22460 613 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SLC7A2P52569 658 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SNTA1Q13424 505 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 C8orf59Q8N0T1 100 aaPredicted RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 VGLL2Q8N8G2 317 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 OR4A15Q8NGL6 344 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 HSD17B14Q9BPX1 270 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 SERINC1Q9NRX5 453 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 EVLQ9UI08 416 aaPredicted RBP20.41■□□□□ 0.86
UPF1-207ENST00000599848 ERGIC3Q9Y282 383 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 B3GALT2O43825 422 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 TNFP01375 233 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 TTKP33981 857 aa20.41■□□□□ 0.86
UPF1-207ENST00000599848 OMPP47874 163 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms