RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 FGF22Q9HCT0 170 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 TOR4AQ9NXH8 423 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 AAR2Q9Y312 384 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 RGSL1A5PLK6 1076 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 FADS2P1A8MWK0 482 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 USP12O75317 370 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 DCDC1P59894 354 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 CDK3Q00526 305 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 PTK2BQ14289 1009 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 SPARCL1Q14515 664 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 PSAPL1Q6NUJ1 521 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 ADAMTSL4Q6UY14 1074 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 ZNF548Q8NEK5 533 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 OR1E3Q8WZA6 343 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 AP2M1Q96CW1 435 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 PDXPQ96GD0 296 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 RIOK2Q9BVS4 552 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 FRMD8Q9BZ67 464 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 CLPBQ9H078 707 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 WDR26Q9H7D7 661 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 DNAJC28Q9NX36 388 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 FRYQ5TBA9 3013 aa19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 GOLGA4Q13439 2230 aaKnown RBP19.43■□□□□ 0.7
SHKBP1-221ENST00000599833 AKAP13Q12802 2813 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 GAPDHSO14556 408 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 AP2A1O95782 977 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 CEACAM5P06731 702 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 MYCLP1P12525 358 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 CEACAM1P13688 526 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 BPIP17213 487 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 CA5AP35218 305 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 RPL22P35268 128 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 HMGCLP35914 325 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 GRK6P43250 576 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 THOP1P52888 689 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 PPM1JQ5JR12 505 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 ARHGEF18Q6ZSZ5 1173 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 DGLUCYQ7Z3D6 616 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 GLRX5Q86SX6 157 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 PHACTR4Q8IZ21 702 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 MAIP1Q8WWC4 291 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 TSACCQ96A04 125 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 TBATAQ96M53 351 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 WDR92Q96MX6 357 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 LRRC61Q9BV99 259 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 TRABDQ9H4I3 376 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 ETNK1Q9HBU6 452 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 IL17CQ9P0M4 197 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 TMPRSS11EQ9UL52 423 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 ZNF148Q9UQR1 794 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 SLC17A4Q9Y2C5 497 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 NEU2Q9Y3R4 380 aa19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 PCYT1BQ9Y5K3 369 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-221ENST00000599833 LY6G6EA0A0G2JKS1 128 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 TRIM38O00635 465 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 DKK1O94907 266 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 CELA2BP08218 269 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 JUNDP17535 347 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 NOVA1P51513 510 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 GNG11P61952 73 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 HNRNPKP61978 463 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 SEMA5AQ13591 1074 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 RAET1GQ6H3X3 334 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 ENPP7Q6UWV6 458 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 TAB3Q8N5C8 712 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 PDCD7Q8N8D1 485 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 SCARF2Q96GP6 870 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 TBL1YQ9BQ87 522 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 FSD1LQ9BXM9 530 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 FAM83DQ9H4H8 585 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 MRPL40Q9NQ50 206 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 PKD2L2Q9NZM6 624 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 ST14Q9Y5Y6 855 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 DGKBQ9Y6T7 804 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 U3KQA8 63 aa19.41■□□□□ 0.7
SHKBP1-221ENST00000599833 ARHGEF17Q96PE2 2063 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 SPAARA0A1B0GVQ0 90 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 SUN1O94901 812 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 HK3P52790 923 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 SRP54P61011 504 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 PRPSAP1Q14558 356 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 PTPRCAPQ14761 206 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 PROX2Q3B8N5 592 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 TRIM74Q86UV6 250 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 OR56A4Q8NGH8 313 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 CCHCR1Q8TD31 782 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 BLOC1S5Q8TDH9 187 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 PPP1R2P1Q96PQ5 205 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 SRPK1Q96SB4 655 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 AP1M1Q9BXS5 423 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 GPR63Q9BZJ6 419 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 HACD3Q9P035 362 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 APOBEC3BQ9UH17 382 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 OAS3Q9Y6K5 1087 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 ZFC3H1O60293 1989 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 FREM2Q5SZK8 3169 aa19.4■□□□□ 0.7
SHKBP1-221ENST00000599833 PGRMC1O00264 195 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 CACNB4O00305 520 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 TNFRSF10CO14798 259 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms