RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SLC17A4Q9Y2C5 497 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 ASXL3Q9C0F0 2248 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 RP1P56715 2156 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 A0A0U1RQS6 177 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 AGRPO00253 132 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 FZD6O60353 706 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 C1QL1O75973 258 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ECEL1O95672 775 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CPNE6O95741 557 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 FGF1P05230 155 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 TPM1P09493 284 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ITIH1P19827 911 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ADCY8P40145 1251 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ACTR1BP42025 376 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 POLD2P49005 469 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 PPM1FP49593 454 aaPredicted RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 ACTR1AP61163 376 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CTBSQ01459 385 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CFHR1Q03591 330 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ZFP36L1Q07352 338 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 TRIM14Q14142 442 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 PTPRRQ15256 657 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 SLC18A3Q16572 532 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ATP13A4Q4VNC1 1196 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ALG1LQ6GMV1 187 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ADAMTSL4Q6UY14 1074 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 MARK2Q7KZI7 788 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 ZNF765Q7L2R6 523 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 NRROSQ86YC3 692 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 GALNT13Q8IUC8 556 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CCDC13Q8IYE1 715 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 NRSN1Q8IZ57 195 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CBARPQ8N350 705 aaPredicted RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 CCNYQ8ND76 341 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 LPCAT1Q8NF37 534 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 SNRNP27Q8WVK2 155 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 MAML1Q92585 1016 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 FATE1Q969F0 183 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 HDAC11Q96DB2 347 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 WBP1Q96G27 269 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 TSGA13Q96PP4 275 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 CCNL2Q96S94 520 aaPredicted RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 ANP32EQ9BTT0 268 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 TDRD1Q9BXT4 1180 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 XPO4Q9C0E2 1151 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 ABCG8Q9H221 673 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 RDH14Q9HBH5 336 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 PCDH9Q9HC56 1237 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ZNHIT6Q9NWK9 470 aaKnown RBP9.76□□□□□ -0.85
VRK3-216ENST00000599342 SEPT10Q9P0V9 454 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ACSL6Q9UKU0 697 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 SSUH2Q9Y2M2 353 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 ITPR1Q14643 2758 aa9.76□□□□□ -0.85
VRK3-216ENST00000599342 SHROOM3Q8TF72 1996 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 PRAMEF33A0A0G2JMD5 474 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 C1orf232A0A0U1RR37 186 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 LRRD1A4D1F6 860 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 INPP4BO15327 924 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 NVLO15381 856 aaKnown RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 CBFA2T2O43439 604 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 AKR1B10O60218 316 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 PRAMEF10O60809 474 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 ASMTLO95671 621 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 SOD1P00441 154 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 FUCA1P04066 466 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 HLA-DQB2P05538 268 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 LIPCP11150 499 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 HNRNPH3P31942 346 aaKnown RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 MAN1A1P33908 653 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 GPR3P46089 330 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 STC1P52823 247 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 MAPK10P53779 464 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 OR1D5P58170 312 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 TAS2R40P59535 323 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 RPL26P61254 145 aaKnown RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 B4GALNT1Q00973 533 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 PTSQ03393 145 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 GBE1Q04446 702 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 MESDQ14696 234 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 NR1D2Q14995 579 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 CLPPQ16740 277 aaPredicted RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 ODF2Q5BJF6 829 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 TMEM164Q5U3C3 297 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 PCSK4Q6UW60 755 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 RFLNAQ6ZTI6 216 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 ZNF438Q7Z4V0 828 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 ZNF605Q86T29 641 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 TRIM74Q86UV6 250 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 NLRP8Q86W28 1048 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 C17orf82Q86X59 251 aaPredicted RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 CPNE8Q86YQ8 564 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 SLITRK4Q8IW52 837 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 RAVER1Q8IY67 606 aaKnown RBP9.75□□□□□ -0.85
VRK3-216ENST00000599342 NAGSQ8N159 534 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 ZNF843Q8N446 348 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 EXD1Q8NHP7 514 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 CCHCR1Q8TD31 782 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 SCAMP4Q969E2 229 aa9.75□□□□□ -0.85
VRK3-216ENST00000599342 FAF2Q96CS3 445 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms