RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NAPEPLDQ6IQ20 393 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GDPD4Q6W3E5 623 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 LINC00523Q86TU6 105 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 IGDCC3Q8IVU1 814 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 DEFB119Q8N690 84 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 TXNDC5Q8NBS9 432 aaKnown RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 TMIEQ8NEW7 156 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 AENQ8WTP8 325 aaKnown RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 FGF11Q92914 225 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 ECHDC3Q96DC8 303 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 ZNF641Q96N77 438 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 KLHL32Q96NJ5 620 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 WDR83Q9BRX9 315 aaKnown RBP9.47□□□□□ -0.89
TRIM28-208ENST00000597172 TXLNGYQ9BZA5 131 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 FAM117AQ9C073 453 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 ATP13A3Q9H7F0 1226 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 GOLGA6AQ9NYA3 693 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 IL36AQ9UHA7 158 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 PCNX1Q96RV3 2341 aa9.47□□□□□ -0.89
TRIM28-208ENST00000597172 MTORP42345 2549 aa9.46□□□□□ -0.89
TRIM28-208ENST00000597172 ANKRD66B4E2M5 251 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 TERTO14746 1132 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 ALOX15BO15296 676 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SOCS5O75159 536 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 UGT2B4P06133 528 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 C7P10643 843 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 TIMP2P16035 220 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 HLA-DPA1P20036 260 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MCM3P25205 808 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MGAT1P26572 445 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SERPINA4P29622 427 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 NPY2RP49146 381 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 COPAP53621 1224 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 ARL4CP56559 192 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SESN2P58004 480 aaPredicted RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 CRADDP78560 199 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SARNPP82979 210 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 CDH17Q12864 832 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 GRM3Q14832 879 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 FASTKD3Q14CZ7 662 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 HIF1AQ16665 826 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 QPCTQ16769 361 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MAP7D1Q3KQU3 841 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 BBS9Q3SYG4 887 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 HP1BP3Q5SSJ5 553 aaPredicted RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 ARMC12Q5T9G4 340 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SDE2Q6IQ49 451 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 TMEM92Q6UXU6 159 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 PPP1R21Q6ZMI0 780 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 TRMT11Q7Z4G4 463 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MMAAQ8IVH4 418 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SPACA3Q8IXA5 215 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 PDIK1LQ8N165 341 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MPP5Q8N3R9 675 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 GRIN3AQ8TCU5 1115 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 HCAR2Q8TDS4 363 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 PDCD6IPQ8WUM4 868 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 OR8D1Q8WZ84 308 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 SPOCK2Q92563 424 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 ARRDC3Q96B67 414 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 IFT43Q96FT9 208 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 FMO2Q99518 471 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 FRMD8Q9BZ67 464 aaPredicted RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 FOXP3Q9BZS1 431 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 RSPH9Q9H1X1 276 aaPredicted RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 XAB2Q9HCS7 855 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MTRF1LQ9UGC7 380 aaKnown RBP9.46□□□□□ -0.9
TRIM28-208ENST00000597172 MMP17Q9ULZ9 603 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 PPIL1Q9Y3C6 166 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 TEX264Q9Y6I9 313 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 LRBAP50851 2863 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 F8P00451 2351 aa9.46□□□□□ -0.9
TRIM28-208ENST00000597172 A0A0U1RQS6 177 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 TSPAN11A1L157 253 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 SDR42E2A6NKP2 422 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 EIF3HO15372 352 aaKnown RBP eCLIP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 SYNCRIPO60506 623 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 PRNPP04156 253 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 PRKCGP05129 697 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 FGF1P05230 155 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 PIRTP0C851 137 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 H2AFXP16104 143 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 CTPS1P17812 591 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 ELK3P41970 407 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 MAGEA4P43358 317 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 RPL26P61254 145 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 RPL6Q02878 288 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 PDIA2Q13087 525 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 ELAVL3Q14576 367 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 BRD3Q15059 726 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 CRY1Q16526 586 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 CDKN3Q16667 212 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 POM121L1PQ3SYA9 428 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 HSF5Q4G112 596 aaPredicted RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 CCDC157Q569K6 752 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 ZNF805Q5CZA5 627 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 UBAP2Q5T6F2 1119 aaKnown RBP9.45□□□□□ -0.9
TRIM28-208ENST00000597172 ARHGAP40Q5TG30 622 aa9.45□□□□□ -0.9
TRIM28-208ENST00000597172 CCDC25Q86WR0 208 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms